PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G20500.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ZF-HD

Protein Properties

Length: 1818aa MW: 166804 Da PI: 9.9572

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G20500.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	86.4	2.9e-27	1624	1675	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + rY+eCl+NhAa+ Ggh+vDGCgEfmp+ +t + l C ACgCHR+FHRr+++ LPERR01G20500.2 1624 RSRYHECLRNHAAASGGHVVDGCGEFMPA----STEDPLACEACGCHRSFHRRDPS 1675 689***********************9....5678**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-26	1609	1673	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-22	1625	1673	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-23	1626	1673	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.501	1627	1673	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	8.7E-25	1736	1807	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.62E-15	1739	1806	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.1E-22	1746	1801	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1818 aa Download sequence Send to blast
MVKFHSVNLI LAVLLISLWT VTPVLSYSEQ DYGRRVKNEK KPDHDKDMSK EYGKRVEHHV 60 NQAAADAALV LKAKEEIAKR TAKHIQSSIA SARVAIHIKE EMLEKTAEVM SRMAGEVSVQ 120 LSKVAKEHTK VAVGDIAAAL KYKQEILKRA AERVKDVSED VNMANKAKQE ILQKVAHDLG 180 KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGV SGGARVHISG GIHGNIHFGA 240 GARAGANAAA SAGAEAKASK SGSSNVGGNA EEYVGGSGSA SEGTKVEGNG NAKAGASAGV 300 GISGGAKVGG GVGGNAGVGS NANVGLGVGA SAGISESAKV GAGIGGSGGV GSNANANAHA 360 GLGVGISGGA KVGGGVGGNA GAGSNTDGYT NAGAGISRST KVGGAVEENA GVGSNAHANA 420 GLGASVGAGI SGGAKVGRGV GGNAGIGSNA NAGLNAGADI SGNAKVGAEM GGNVGVGSNA 480 NAGLGAGVAV SGGAKVGGGI GGNMGAGSNA NANVGLGAGV SASGGAKVGG GVGGNASVSA 540 NANGYAGVGA GISGSGKVGG AIEGNAGVGS NAKVNTGLGA GVGVGISGGA KVGAGVGGNA 600 DAGSNANASL GVSAGVSGSA KVGADAGGNL GVGSNANAGL GAGVGISGGA KVGGGIGGSV 660 GAGSNANVGA DISGNSKVGG AVEGNAGAGS KANANVGLSA SAAISGGAKV GGGISGNAGV 720 GSNANAGLGV GAGISGSAKV GAGIGGNVGV NSNANVGIGA GAGISGGAKV DSDIGGSASV 780 GSNANAGLVG AGIGISGGTK VGGGIGGNAG VSSDADGYAK TGAEKTKNTK AGSGENGGIG 840 SNANTNVGFD AGAGISGGAK VGGGTGGNAG VDSNANANAN ADLSAGVGIS AGAKAGGAIG 900 GNMAGVVNAN AGLGASASKD AKIGGGIGGN IRSGGNVNAG VNAGLGVGVS KDAKIGGDTG 960 GNVGGGGNVK ADANVDLGAS AYKDTKIGTE AKGNVGGVGN ANAGVGASIS KEAKISGGIE 1020 GNIVGGGNAN AGIGASISKE AKINGGIEGN VGDGGNANAG ANAGIGASIY KEAKINGGIG 1080 GNTGGGGNAN AGLGASVGIS GGAKIGGNIK ENVNGSSNGN DEKSGANKKS KDSEAYVGGK 1140 SSTNVGANAG VGISGGAKIG GNVGGNAGGN ANGGVGANAG VSGDSKVGGD IRGNLGGGDK 1200 SKTNVGANGG LGISGDAKVG GSAGGNIGGN ANSGVVANAG VGAGVGFSGG ARIGAGIGGN 1260 VGGNGNANAD VGSSPNVYGN NKVGGGVGGK AGASANVGAN VGIGAGFGVS GGGRAGASVG 1320 ENGNVGIGGN ANAGANVAGG TSLGAHFGAS KHVGVGFGAN AGIGGGFNFG ASGKANAGAN 1380 SAIGGSGGSN TGIGASASKS VGAGVDVGAG SNAGIGASAS KSVGVDAGAG SNTGIGASAS 1440 KSVGAGVDAG AGSNAGIGAS ASKSVGAGIG VGAGSNVGIG ASASKSVGAG VGVGADSNAG 1500 VGVSASKSVG AGAGIGAYAN GGIGASASKS VSGGADADAK VGGNDGVGAS GKDKTDVEEG 1560 ASKEKIDGEE EASKSAGATA NKGYLHVRGM ELSGHDEDAG YAGGGCSPPT PLHRGPAAET 1620 TTTRSRYHEC LRNHAAASGG HVVDGCGEFM PASTEDPLAC EACGCHRSFH RRDPSPARAG 1680 AAPLLLPLHR PASVNPRAPA LLLTPAGSKQ GLPLPVYGTT PSSGTGTTTA SSSEERLRPS 1740 PAPARRQSRT TFTREQKEQM LAFAESVGWR IQRQEEATVE QFCTQVGVRR QAFKVWMHNN 1800 KHSSKQKQQQ QLQENRQE

Sequence ? help Back to Top

Protein Sequence Length: 1818 aa Download sequence Send to blast

MVKFHSVNLI LAVLLISLWT VTPVLSYSEQ DYGRRVKNEK KPDHDKDMSK EYGKRVEHHV  60
NQAAADAALV LKAKEEIAKR TAKHIQSSIA SARVAIHIKE EMLEKTAEVM SRMAGEVSVQ  120
LSKVAKEHTK VAVGDIAAAL KYKQEILKRA AERVKDVSED VNMANKAKQE ILQKVAHDLG  180
KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGV SGGARVHISG GIHGNIHFGA  240
GARAGANAAA SAGAEAKASK SGSSNVGGNA EEYVGGSGSA SEGTKVEGNG NAKAGASAGV  300
GISGGAKVGG GVGGNAGVGS NANVGLGVGA SAGISESAKV GAGIGGSGGV GSNANANAHA  360
GLGVGISGGA KVGGGVGGNA GAGSNTDGYT NAGAGISRST KVGGAVEENA GVGSNAHANA  420
GLGASVGAGI SGGAKVGRGV GGNAGIGSNA NAGLNAGADI SGNAKVGAEM GGNVGVGSNA  480
NAGLGAGVAV SGGAKVGGGI GGNMGAGSNA NANVGLGAGV SASGGAKVGG GVGGNASVSA  540
NANGYAGVGA GISGSGKVGG AIEGNAGVGS NAKVNTGLGA GVGVGISGGA KVGAGVGGNA  600
DAGSNANASL GVSAGVSGSA KVGADAGGNL GVGSNANAGL GAGVGISGGA KVGGGIGGSV  660
GAGSNANVGA DISGNSKVGG AVEGNAGAGS KANANVGLSA SAAISGGAKV GGGISGNAGV  720
GSNANAGLGV GAGISGSAKV GAGIGGNVGV NSNANVGIGA GAGISGGAKV DSDIGGSASV  780
GSNANAGLVG AGIGISGGTK VGGGIGGNAG VSSDADGYAK TGAEKTKNTK AGSGENGGIG  840
SNANTNVGFD AGAGISGGAK VGGGTGGNAG VDSNANANAN ADLSAGVGIS AGAKAGGAIG  900
GNMAGVVNAN AGLGASASKD AKIGGGIGGN IRSGGNVNAG VNAGLGVGVS KDAKIGGDTG  960
GNVGGGGNVK ADANVDLGAS AYKDTKIGTE AKGNVGGVGN ANAGVGASIS KEAKISGGIE  1020
GNIVGGGNAN AGIGASISKE AKINGGIEGN VGDGGNANAG ANAGIGASIY KEAKINGGIG  1080
GNTGGGGNAN AGLGASVGIS GGAKIGGNIK ENVNGSSNGN DEKSGANKKS KDSEAYVGGK  1140
SSTNVGANAG VGISGGAKIG GNVGGNAGGN ANGGVGANAG VSGDSKVGGD IRGNLGGGDK  1200
SKTNVGANGG LGISGDAKVG GSAGGNIGGN ANSGVVANAG VGAGVGFSGG ARIGAGIGGN  1260
VGGNGNANAD VGSSPNVYGN NKVGGGVGGK AGASANVGAN VGIGAGFGVS GGGRAGASVG  1320
ENGNVGIGGN ANAGANVAGG TSLGAHFGAS KHVGVGFGAN AGIGGGFNFG ASGKANAGAN  1380
SAIGGSGGSN TGIGASASKS VGAGVDVGAG SNAGIGASAS KSVGVDAGAG SNTGIGASAS  1440
KSVGAGVDAG AGSNAGIGAS ASKSVGAGIG VGAGSNVGIG ASASKSVGAG VGVGADSNAG  1500
VGVSASKSVG AGAGIGAYAN GGIGASASKS VSGGADADAK VGGNDGVGAS GKDKTDVEEG  1560
ASKEKIDGEE EASKSAGATA NKGYLHVRGM ELSGHDEDAG YAGGGCSPPT PLHRGPAAET  1620
TTTRSRYHEC LRNHAAASGG HVVDGCGEFM PASTEDPLAC EACGCHRSFH RRDPSPARAG  1680
AAPLLLPLHR PASVNPRAPA LLLTPAGSKQ GLPLPVYGTT PSSGTGTTTA SSSEERLRPS  1740
PAPARRQSRT TFTREQKEQM LAFAESVGWR IQRQEEATVE QFCTQVGVRR QAFKVWMHNN  1800
KHSSKQKQQQ QLQENRQE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G20500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP007251	1e-180	AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14.
GenBank	AP014957	1e-180	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-180	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638769.1	0.0	fibroin heavy chain
TrEMBL	A0A0D9V3B8	0.0	A0A0D9V3B8_9ORYZ; Uncharacterized protein
STRING	LPERR01G20500.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13926	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-34	homeobox protein 22