PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G19310.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LSD

Protein Properties

Length: 1517aa MW: 159256 Da PI: 3.8301

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G19310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.9	1.2e-11	1487	1511	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ LPERR01G19310.1 1487 CGSCRVLLAYFRGAGHVHCTCCQTM 1511 ***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.5E-12	1484	1514	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.1E-8	1487	1510	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 1517 aa Download sequence Send to blast
MATSPETAKP PDTTSRATPP PPLFPSPLQK NPSLTTAAPP EPSPPSHATP IPPSSSGQAW 60 PEADEPLPST PTPIDGPPGA AGPPPPSFPS SLELDTSVVA AAAKPSSRSL LRPGEALFEF 120 YHDAAPLSPS SSEETAEDAS TASPPATPPP LVLCASPDSY YSDPDAMESP PRDPMGSDEG 180 WHTAPESPTP PLEARQEGFQ QQQPPIPFPT NSPECDSSEP AELPLPPTSP AEISRTSPDA 240 DEIVDVVAVT PGETPAGSTI AMEVTHGEME IDTVAVSVPP VLECGEEVSL QESMQRPSSL 300 AMNIEQETVQ RPSSPAMDAE IDIVVAATPE VPVSMPPAPV LESGEGSVQE SMQSPSSLAT 360 KAEQESVQRT SSPTIDTKVD VVVVATPEEA PGSSTLAMEV TYGETDTATV MTLEEAPGSK 420 LAMEVIYGET GTAAVSVPLS PVLKSGEEGS LQESMQKPSS PAMNSEPESM QKPSSPAMNT 480 EPESMQRPPS PAMNAEEEST QRPSSPTMNA ETDVMVAVTP EEAPVSMVAM EVTYGATDMA 540 AVSVPPAQVL ESGEKRSLQE SIQRPSSLAM KAQQESMQRP SSLTLHTEIE TVAVAMPEEA 600 PGPTVATEVT YRETDTAAVS VLPAPALEGG DEGSMHRPSS LAMNTQQESM QRPSSPTMDT 660 EIDTVVAAMP EEAPGSIVAT DVTYRETDTA AVSVPPAPVL ESGDVGSLQE SMQGPSSFVM 720 NTEPGSMQGS SSTTMDTKID VVVSAKPEEA PGSMLAVEVT YGETDIAAVS VPPALILESG 780 EEVSLEESTQ RPSSPATNTD PVSMQRPSSP TVDTEIDVAV AARPENAPGS TLEMEEAHRE 840 TDTTTVSVPL APVLEGGEKG SLQESMQRSF SPKMNTELES MQRLSSPAMD IEPESMQKSS 900 SPTLDTKPCS PEMVPPGFEC FKASWLPLPP PIPAESIPPV PVAAAPEALV VMPEEAAESL 960 PSSEALHAEK HASVTQAEPN SPDAPPPGFE NFKSSWLPLS MTHIPVETTD VFPDVVVTKT 1020 VEAPIEEVSG RLPVLEVMNM ETDIVLNVLP TERAQELLQQ PLLRPPSPVA QSESRSQDEM 1080 APPGFENFKS SSEPCFPEEM ASSGFENLRS SSEPCSPEEM APPGFENFKS SWPPLPTLPQ 1140 TTYALPNAAA IDASAVTLED KAGSPVLEAM DVDMDTIHPP PLSFDSRVEG SLQEPLQRAP 1200 SPIMQEAPCL PDRAPPGFET FKSSQILLPS LSLAQTTNAQ QDQLVSEAVS LIEEAPQPLH 1260 SVDVMGANMD AEPPLLLPSE SGPDGPSPQQ VPCLASPAEK GTITCLPDIV RSGGDDLEPS 1320 QLLPSPAVIS PVQTPDGLAD VPAIDRIAVA SEESPHRLLV SGGMEDGTVP IQSSPLDNTS 1380 EGSLPQLESQ VHSSTAQAAN SLLDAPGSKS LPVASEEMPQ PPLASQATNT DHIDTTEMQP 1440 QSEGIVGELL QPQHPPSSAH SAPYLQDSMS LVLPPPPLHK EIGQMVCGSC RVLLAYFRGA 1500 GHVHCTCCQT MNLVLEV

Sequence ? help Back to Top

Protein Sequence Length: 1517 aa Download sequence Send to blast

MATSPETAKP PDTTSRATPP PPLFPSPLQK NPSLTTAAPP EPSPPSHATP IPPSSSGQAW  60
PEADEPLPST PTPIDGPPGA AGPPPPSFPS SLELDTSVVA AAAKPSSRSL LRPGEALFEF  120
YHDAAPLSPS SSEETAEDAS TASPPATPPP LVLCASPDSY YSDPDAMESP PRDPMGSDEG  180
WHTAPESPTP PLEARQEGFQ QQQPPIPFPT NSPECDSSEP AELPLPPTSP AEISRTSPDA  240
DEIVDVVAVT PGETPAGSTI AMEVTHGEME IDTVAVSVPP VLECGEEVSL QESMQRPSSL  300
AMNIEQETVQ RPSSPAMDAE IDIVVAATPE VPVSMPPAPV LESGEGSVQE SMQSPSSLAT  360
KAEQESVQRT SSPTIDTKVD VVVVATPEEA PGSSTLAMEV TYGETDTATV MTLEEAPGSK  420
LAMEVIYGET GTAAVSVPLS PVLKSGEEGS LQESMQKPSS PAMNSEPESM QKPSSPAMNT  480
EPESMQRPPS PAMNAEEEST QRPSSPTMNA ETDVMVAVTP EEAPVSMVAM EVTYGATDMA  540
AVSVPPAQVL ESGEKRSLQE SIQRPSSLAM KAQQESMQRP SSLTLHTEIE TVAVAMPEEA  600
PGPTVATEVT YRETDTAAVS VLPAPALEGG DEGSMHRPSS LAMNTQQESM QRPSSPTMDT  660
EIDTVVAAMP EEAPGSIVAT DVTYRETDTA AVSVPPAPVL ESGDVGSLQE SMQGPSSFVM  720
NTEPGSMQGS SSTTMDTKID VVVSAKPEEA PGSMLAVEVT YGETDIAAVS VPPALILESG  780
EEVSLEESTQ RPSSPATNTD PVSMQRPSSP TVDTEIDVAV AARPENAPGS TLEMEEAHRE  840
TDTTTVSVPL APVLEGGEKG SLQESMQRSF SPKMNTELES MQRLSSPAMD IEPESMQKSS  900
SPTLDTKPCS PEMVPPGFEC FKASWLPLPP PIPAESIPPV PVAAAPEALV VMPEEAAESL  960
PSSEALHAEK HASVTQAEPN SPDAPPPGFE NFKSSWLPLS MTHIPVETTD VFPDVVVTKT  1020
VEAPIEEVSG RLPVLEVMNM ETDIVLNVLP TERAQELLQQ PLLRPPSPVA QSESRSQDEM  1080
APPGFENFKS SSEPCFPEEM ASSGFENLRS SSEPCSPEEM APPGFENFKS SWPPLPTLPQ  1140
TTYALPNAAA IDASAVTLED KAGSPVLEAM DVDMDTIHPP PLSFDSRVEG SLQEPLQRAP  1200
SPIMQEAPCL PDRAPPGFET FKSSQILLPS LSLAQTTNAQ QDQLVSEAVS LIEEAPQPLH  1260
SVDVMGANMD AEPPLLLPSE SGPDGPSPQQ VPCLASPAEK GTITCLPDIV RSGGDDLEPS  1320
QLLPSPAVIS PVQTPDGLAD VPAIDRIAVA SEESPHRLLV SGGMEDGTVP IQSSPLDNTS  1380
EGSLPQLESQ VHSSTAQAAN SLLDAPGSKS LPVASEEMPQ PPLASQATNT DHIDTTEMQP  1440
QSEGIVGELL QPQHPPSSAH SAPYLQDSMS LVLPPPPLHK EIGQMVCGSC RVLLAYFRGA  1500
GHVHCTCCQT MNLVLEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G19310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644363.2	0.0	PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
TrEMBL	A0A0D9V2U7	0.0	A0A0D9V2U7_9ORYZ; Uncharacterized protein
STRING	LPERR01G19310.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-11	lsd one like 2