PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20787.2 Da PI: 10.617 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 55.6 | 1.5e-17 | 31 | 138 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..........edamsslvyeAearardPvyGavgvilkl 83 +CaaC +l+ +C+ C++apyfpae++++f+++ +lFG +++l+ ++a + + m+++v+ A+a a dP + + v lkl LPERR01G17340.1 31 PCAACTLLGLTCTLArCPMAPYFPAERRERFRYAFHLFGIKTILRSIRAQVPGPAsssisslwksTFGMAAIVFTADASAADPARLSDDVRLKL 124 7***********9655*******************************9984444335677888777889************************* PP DUF260 84 qqqleqlkaelall 97 +qql++lka a l LPERR01G17340.1 125 SQQLDRLKAFRAIL 138 *******9977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.023 | 30 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-12 | 31 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MPAPASTPIT PPPPAPGRLP CSRQYVGPLL PCAACTLLGL TCTLARCPMA PYFPAERRER 60 FRYAFHLFGI KTILRSIRAQ VPGPASSSIS SLWKSTFGMA AIVFTADASA ADPARLSDDV 120 RLKLSQQLDR LKAFRAILMQ QKQQNKKRPQ QQPPYAVETA HDSTSTVDAA AALATRMQML 180 RLNAAAANGE LP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9V264 | 1e-136 | A0A0D9V264_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17340.1 | 1e-136 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15375 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 7e-08 | LOB domain-containing protein 9 |