PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G06630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 23017.8 Da PI: 8.3832 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.2e-14 | 36 | 86 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +WT+eEd l ++ k G ++W+++a++m+ +R++ +c++rw+ +l LPERR01G06630.1 36 PWTPEEDACLERLAKANGFRHWRRVASEMPmppwqRRRSARHCRDRWREHL 86 8***********************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.874 | 29 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-10 | 33 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-16 | 36 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.19E-11 | 36 | 86 | No hit | No description |
SuperFamily | SSF46689 | 4.81E-15 | 36 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-12 | 36 | 86 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.308 | 87 | 140 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
METDSSDCLS TVEEAAPATP STSSGRIVVR IRLQPPWTPE EDACLERLAK ANGFRHWRRV 60 ASEMPMPPWQ RRRSARHCRD RWREHLARDV YHRPFTPDDD AELAFLRLRG AGGGDSWKDV 120 SRAAYCRTSR VMRRRWRELR KSDAFLGALY GAQPPADQEA GMDAAMDDAP THSDVLTSSV 180 ASYSAGCGAV ASGGNVTAVA PRFACLAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G06630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 2e-62 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A0D9UY63 | 1e-149 | A0A0D9UY63_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G06630.1 | 1e-149 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-13 | myb domain protein 73 |