PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G03760.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 276aa    MW: 31055.8 Da    PI: 6.1836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G03760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1876125255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  LPERR01G03760.1  76 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAHAYDEAARAMYG 125
                      59****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1275125IPR001471AP2/ERF domain
PROSITE profilePS5103221.6876133IPR001471AP2/ERF domain
SMARTSM003806.8E-3476139IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2076134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3077134IPR001471AP2/ERF domain
PRINTSPR003674.5E-97788IPR001471AP2/ERF domain
CDDcd000184.92E-3177135No hitNo description
PRINTSPR003674.5E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MERGEVRTED CSPAQVRKKR TRRKSDGPDS IAETIKWWKE KNQKLQEENS SRKAPAKGSK  60
KGCMAGKGGP ENSHCAYRGV RQRTWGKWVA EIREPNRGRR LWLGSFPTAV EAAHAYDEAA  120
RAMYGSTARV NFADNSMDAN SGCTSAPSLM MSNGPTYVRS DEKDELESPP FMVTNCPPAV  180
LHQSAKKDVL ECVLPQVQDV KTEVSNDLRS IHEEQKTLEV CQSEGSVLHK EVSVTYDYFN  240
VHEVVEMIIV ELSADQKMEV HEEYKEGDDG FSLFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1577132359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G03760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009710.0AF300971.2 Oryza sativa DRE binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643786.11e-177PREDICTED: dehydration-responsive element-binding protein 2A
SwissprotA2WL191e-174DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D9UX480.0A0A0D9UX48_9ORYZ; Uncharacterized protein
STRINGLPERR01G03760.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-35ERF family protein