PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v2274940.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 491aa MW: 51791.6 Da PI: 7.0968

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v2274940.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.3	1.1e-41	122	247	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Lj6g3v2274940.1 122 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaph 215 5699****************************************************************99988888888888555555556666 PP TCP 89 ...........kaaksaakskksqksaasalnlakesr 115 + + +++ ++++ +l ++++ + Lj6g3v2274940.1 216 tfhgaalglahQ------SYEEAFQQHTPMLGFHHHRQ 247 666654433220......33333333333355555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-40	126	274	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	127	181	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MELSDLQNNN NNNNRGTSTT HHPHHHQQEP SPSPPSSVFD GRQSAPFIMG SMSIQAGLTT 60 TSSSSSSSNS SSSSSPSASV SAPAPSQLID ASLAIATRSD PPTHQLTIAA PTPAPVTTVA 120 NPPKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA 180 ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHTFHGA ALGLAHQSYE EAFQQHTPML 240 GFHHHRQQLM SADQISEALP GDSSENYMRK RYREDLFKDD ANNQSSQQNE TGDGPSSPKQ 300 FKPDGGGGGS SSSASGLLRP SNLLPSAAMW AVAPAPAATV GGSTIWMLPV TAGGAVNSAS 360 DNQHTMWPFP PPPQAGGNAN NPAQLHFMQR FNLPTGGVGV EFQGGRSSGL QLGSMYQPPS 420 QHLGLAMSDS NLGMLAALNA YSNNNNNNRG FNVNSDHQTQ NHHHHSLEHQ HQAQPQPTTD 480 SGGEDGPNSS Q

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MELSDLQNNN NNNNRGTSTT HHPHHHQQEP SPSPPSSVFD GRQSAPFIMG SMSIQAGLTT  60
TSSSSSSSNS SSSSSPSASV SAPAPSQLID ASLAIATRSD PPTHQLTIAA PTPAPVTTVA  120
NPPKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA  180
ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHTFHGA ALGLAHQSYE EAFQQHTPML  240
GFHHHRQQLM SADQISEALP GDSSENYMRK RYREDLFKDD ANNQSSQQNE TGDGPSSPKQ  300
FKPDGGGGGS SSSASGLLRP SNLLPSAAMW AVAPAPAATV GGSTIWMLPV TAGGAVNSAS  360
DNQHTMWPFP PPPQAGGNAN NPAQLHFMQR FNLPTGGVGV EFQGGRSSGL QLGSMYQPPS  420
QHLGLAMSDS NLGMLAALNA YSNNNNNNRG FNVNSDHQTQ NHHHHSLEHQ HQAQPQPTTD  480
SGGEDGPNSS Q

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.19992	0.0	floral bud

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v2274940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010521	0.0	AP010521.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT39N07, TM1498, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592963.1	1e-155	transcription factor TCP8 isoform X1
Swissprot	Q9C518	3e-89	TCP8_ARATH; Transcription factor TCP8
TrEMBL	G7INN6	1e-154	G7INN6_MEDTR; TCP family transcription factor
STRING	AES63214	1e-155	(Medicago truncatula)
STRING	AES63253	1e-155	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-79	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]