PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1916050.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 798aa    MW: 89695.9 Da    PI: 5.9672
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1916050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.41.8e-37128205178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv+gCe+d+se+k yhrrh+vC  +++ap+v+ +g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  Lj6g3v1916050.1 128 RCQVPGCEVDISELKGYHRRHRVCLRCANAPTVVFNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKAP 205
                      6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-29124190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.017126203IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-34127207IPR004333Transcription factor, SBP-box
PfamPF031106.2E-28129203IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MEPQSQSQSQ SQSQLQLQAS LPLPPPPHMD PDDPSSSVWD LTYLLDFNLD DDAPVFPFDD  60
NNLSETPLTD PQDQEEETHK VRKRDPMLTC PNFLAGRVPC ACPEMDALLE EQGLPANKRP  120
RTAPSAARCQ VPGCEVDISE LKGYHRRHRV CLRCANAPTV VFNGEAKRYC QQCGKFHVLS  180
DFDEGKRSCR RKLERHNNRR RRKAPDSRAA ADHEPQAVTQ NEEFSGDLEA GKDCSNLSSE  240
IVEKEASPPS RDHEEEPVAV WSSTLDTPNI NGDSVVSFVA SGTSAQVNGV NDVSNISNSP  300
PSYCDNKSAY SSMCQTGRIS FKLYDWNPAE FPRRLRHQIF QWLASMPLEL EGYIRPGCTI  360
LTIFIAMPNI MWINLQKDPL YYVHDLVAPR KMLSGRGTTL VHLNDMMFRV MKDGTSVTKV  420
EVNMQAPRLH YVHPTCFEAG RPMEFFACGS NLLQPKFRFL VSFSGKYLKY DYCVPSPHNW  480
SEDNISCVND NQLYKIYVPH TDECLFGPAF IEVDNESGLS NFIPVLIGDK EICTEMKTLQ  540
QKLDASLPSK QFQSASGDSI CSSCEALAHR HTASSDLLVD IAWLLKDPTS ESFDRVMTAS  600
QIQRYCYLLD FLICNDSTII LGRILPNLII LTESMKSNFV INRISDIDMT ELLKCMHNAR  660
DAICQKHRKD GGVVAPSEME DFEAAQSGSQ NNMQSVVAVN YQGILPGPDS NLTVLRCPTS  720
NDKNEKIPLL KQEIIMNVEE FPKRCDRRYL TRGLLSSRPA IFMAVSVAVC LGVCVSVLHH  780
HGRVSELALS IRRCLFNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-42125211288squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189201RRKLERHNNRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.10750.0floral bud| pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1916050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027353393.10.0squamosa promoter-binding-like protein 7 isoform X2
TrEMBLA0A2Z6M5830.0A0A2Z6M583_TRISU; Uncharacterized protein
STRINGGLYMA15G10620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7