PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1914560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 588aa MW: 66630.9 Da PI: 5.7197 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 310.1 | 5e-95 | 216 | 586 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetseknsseelaalkl..fsevsPil 91 e Ll+cAe v +++e+a++lL++ + +s++++p++R+++yf+eAL++r+ +++ +++ k + ++++ +++ s+ + ++ f+ev P++ Lj6g3v1914560.1 216 AESLLSCAEKVGYQQFERARKLLSHCKSFSSKTASPVKRVVHYFAEALHHRIDKETGRVSsKEMqEMKPFDPEVLSKGTLNPTVyaFYEVLPFV 309 578***************************************************66555513443444444444333333222256******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 +++ +ta qaI e v +++++H iD++i +G+QW +L++aL sR + p l+iT+vgs ++s++e+e tge L+++A++l++pf+f+v++++ Lj6g3v1914560.1 310 QVTMFTAVQAIIENVTEAKKIHLIDLEIRKGAQWTTLMHALESRHDCPVeLLKITAVGS-GTTSRREIEDTGESLKDYAHSLNIPFSFSVVMVS 402 *********************************************6555499*******.6679**************************8666 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 e+l++++++++p+E++aV +++++ + +s +les ++++v++++P v+vv+e ea+hns+sF++rf+eal y+sa+fd+lea + ++ Lj6g3v1914560.1 403 --EMLSVDQFEIDPEETVAVYSQFAIRSKILQSEQLES----IMRVVRTIRPVVMVVAEIEANHNSTSFVKRFIEALFYFSAFFDCLEACMKHD 490 ..78899*******************999988888888....*************************************************999 PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 +++r+++E +g i+n+va+egaer++r+ t Wre ++++G+++ +ls qa+l+ ++++ + + + + ++l+ gWk+ p+ svS Lj6g3v1914560.1 491 EQNRMMIESL-FGHGIRNIVAAEGAERKHRNVTIDVWREFFSRFGMEETELSRVSLYQADLVAKRFPcGSCSTFHMNGHCLLVGWKGTPISSVS 583 9******998.********************************************************99989999******************* PP GRAS 372 aWr 374 +W+ Lj6g3v1914560.1 584 VWK 586 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.012 | 189 | 565 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-92 | 216 | 586 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MEESCHFREL TPSAVEDNLS SSNGILWASN EGLNEMKNVQ FSKETGGIDS LCLDFELFPE 60 KEGLLLSTDQ QKDHQQPSYE QLDNLRFDMV SSPHQNQVEG VMKFDENFPT KFRYPGKNKQ 120 YTTPLAPVEI LKKYGKGFKR LCDEGKILHP VVDSSAVITN DDGRMKLSTE DVMRVAGTRA 180 IQSASESPGL DLLVTHPFGF SFSELYAEEK EDVALAESLL SCAEKVGYQQ FERARKLLSH 240 CKSFSSKTAS PVKRVVHYFA EALHHRIDKE TGRVSSKEMQ EMKPFDPEVL SKGTLNPTVY 300 AFYEVLPFVQ VTMFTAVQAI IENVTEAKKI HLIDLEIRKG AQWTTLMHAL ESRHDCPVEL 360 LKITAVGSGT TSRREIEDTG ESLKDYAHSL NIPFSFSVVM VSEMLSVDQF EIDPEETVAV 420 YSQFAIRSKI LQSEQLESIM RVVRTIRPVV MVVAEIEANH NSTSFVKRFI EALFYFSAFF 480 DCLEACMKHD EQNRMMIESL FGHGIRNIVA AEGAERKHRN VTIDVWREFF SRFGMEETEL 540 SRVSLYQADL VAKRFPCGSC STFHMNGHCL LVGWKGTPIS SVSVWKFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-41 | 217 | 586 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1914560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027339666.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A4D6KJ76 | 0.0 | A0A4D6KJ76_VIGUN; DELLA protein | ||||
STRING | XP_007147356.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-53 | RGA-like 2 |