PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1914560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 588aa    MW: 66630.9 Da    PI: 5.7197
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1914560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.15e-952165862374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetseknsseelaalkl..fsevsPil 91 
                       e Ll+cAe v  +++e+a++lL++ +  +s++++p++R+++yf+eAL++r+ +++ +++ k + ++++ +++  s+ +   ++  f+ev P++
  Lj6g3v1914560.1 216 AESLLSCAEKVGYQQFERARKLLSHCKSFSSKTASPVKRVVHYFAEALHHRIDKETGRVSsKEMqEMKPFDPEVLSKGTLNPTVyaFYEVLPFV 309
                      578***************************************************66555513443444444444333333222256******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +++ +ta qaI e v +++++H iD++i +G+QW +L++aL sR + p   l+iT+vgs  ++s++e+e tge L+++A++l++pf+f+v++++
  Lj6g3v1914560.1 310 QVTMFTAVQAIIENVTEAKKIHLIDLEIRKGAQWTTLMHALESRHDCPVeLLKITAVGS-GTTSRREIEDTGESLKDYAHSLNIPFSFSVVMVS 402
                      *********************************************6555499*******.6679**************************8666 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        e+l++++++++p+E++aV +++++ +   +s +les    ++++v++++P v+vv+e ea+hns+sF++rf+eal y+sa+fd+lea + ++
  Lj6g3v1914560.1 403 --EMLSVDQFEIDPEETVAVYSQFAIRSKILQSEQLES----IMRVVRTIRPVVMVVAEIEANHNSTSFVKRFIEALFYFSAFFDCLEACMKHD 490
                      ..78899*******************999988888888....*************************************************999 PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                      +++r+++E   +g  i+n+va+egaer++r+ t   Wre ++++G+++ +ls     qa+l+ ++++ +   + + + ++l+ gWk+ p+ svS
  Lj6g3v1914560.1 491 EQNRMMIESL-FGHGIRNIVAAEGAERKHRNVTIDVWREFFSRFGMEETELSRVSLYQADLVAKRFPcGSCSTFHMNGHCLLVGWKGTPISSVS 583
                      9******998.********************************************************99989999******************* PP

             GRAS 372 aWr 374
                      +W+
  Lj6g3v1914560.1 584 VWK 586
                      **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.012189565IPR005202Transcription factor GRAS
PfamPF035141.7E-92216586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEESCHFREL TPSAVEDNLS SSNGILWASN EGLNEMKNVQ FSKETGGIDS LCLDFELFPE  60
KEGLLLSTDQ QKDHQQPSYE QLDNLRFDMV SSPHQNQVEG VMKFDENFPT KFRYPGKNKQ  120
YTTPLAPVEI LKKYGKGFKR LCDEGKILHP VVDSSAVITN DDGRMKLSTE DVMRVAGTRA  180
IQSASESPGL DLLVTHPFGF SFSELYAEEK EDVALAESLL SCAEKVGYQQ FERARKLLSH  240
CKSFSSKTAS PVKRVVHYFA EALHHRIDKE TGRVSSKEMQ EMKPFDPEVL SKGTLNPTVY  300
AFYEVLPFVQ VTMFTAVQAI IENVTEAKKI HLIDLEIRKG AQWTTLMHAL ESRHDCPVEL  360
LKITAVGSGT TSRREIEDTG ESLKDYAHSL NIPFSFSVVM VSEMLSVDQF EIDPEETVAV  420
YSQFAIRSKI LQSEQLESIM RVVRTIRPVV MVVAEIEANH NSTSFVKRFI EALFYFSAFF  480
DCLEACMKHD EQNRMMIESL FGHGIRNIVA AEGAERKHRN VTIDVWREFF SRFGMEETEL  540
SRVSLYQADL VAKRFPCGSC STFHMNGHCL LVGWKGTPIS SVSVWKFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-412175866375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1914560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339666.10.0DELLA protein RGL1-like
TrEMBLA0A4D6KJ760.0A0A4D6KJ76_VIGUN; DELLA protein
STRINGXP_007147356.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-53RGA-like 2