PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1300850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 26537.8 Da PI: 7.2935 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 85 | 139 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q +Le++F++n ++a++++ LA++l+L+ rq+ vWFqNrRa+ k Lj6g3v1300850.1 85 RKKLRLTKAQSFRLEDAFKMNDSINAAQKQALAEELNLKPRQIEVWFQNRRARTK 139 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 100.2 | 1.9e-32 | 85 | 173 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q+ LE+ F++++ ++ +K++la+eL+l+prq++vWFqnrRARtk+kq+E+++e+ k+ +++l++en rL+ke eeLr + Lj6g3v1300850.1 85 RKKLRLTKAQSFRLEDAFKMNDSINAAQKQALAEELNLKPRQIEVWFQNRRARTKLKQTEVNCEFFKKIHEKLTNENLRLKKELEELR-A 173 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 67 | 139 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.82E-18 | 74 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-15 | 83 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-15 | 85 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.81E-14 | 85 | 142 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.6E-16 | 141 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEGDDEACNK GLSLELRLGA YESKDQEKQK VEKPVAAAGL DLSFDDDHDQ DHHDDDEGKG 60 LFLKRGNEEH HHPNEESPDN TNDSRKKLRL TKAQSFRLED AFKMNDSINA AQKQALAEEL 120 NLKPRQIEVW FQNRRARTKL KQTEVNCEFF KKIHEKLTNE NLRLKKELEE LRALKVGAPP 180 LHSSHLSKAS EIHSFCPSCR SLFIRKPNEG NNNAAISNVV PNSCCKLQMK RV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 89 | SRKKLRL |
2 | 133 | 141 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1300850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006587005.1 | 9e-64 | homeobox-leucine zipper protein HAT22 | ||||
Refseq | XP_028180487.1 | 9e-64 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 4e-40 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A371H981 | 4e-63 | A0A371H981_MUCPR; Homeobox-leucine zipper protein HOX19 | ||||
STRING | GLYMA09G07051.1 | 3e-63 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-29 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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