PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1053520.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 254aa    MW: 29722.3 Da    PI: 5.8933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1053520.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.8e-1760110656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++  +q+++Le+ Fe ++++  e + +LA++lgL+ +qV +WFqNrRa++k
  Lj6g3v1053520.2  60 RLRFDQVKALERSFELDNKLEPEYKVKLAEELGLQPKQVAIWFQNRRARWK 110
                      45558*********************************************9 PP
2HD-ZIP_I/II122.91.6e-3956148193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl  +qvk+LE+sFe ++kLepe Kv+la+eLglqp+qva+WFqnrRAR+ktkqlE+dy  Lk+++d+lk e ++L++e+e+L+ +++e
  Lj6g3v1053520.2  56 EKKRRLRFDQVKALERSFELDNKLEPEYKVKLAEELGLQPKQVAIWFQNRRARWKTKQLERDYGILKSNFDHLKVEYSNLKQENEALTMKVRE 148
                      69*************************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.98552112IPR001356Homeobox domain
SuperFamilySSF466893.89E-1756114IPR009057Homeodomain-like
CDDcd000866.05E-1457113No hitNo description
SMARTSM003891.1E-1358116IPR001356Homeobox domain
PfamPF000461.3E-1459110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-1862119IPR009057Homeodomain-like
PRINTSPR000314.7E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000314.7E-592108IPR000047Helix-turn-helix motif
PfamPF021831.1E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKRLNNSDTM ATLVSKFPSK GVKQRNETQG YSEEFQAMLD RLDQEDSYED VSLVLEKKRR  60
LRFDQVKALE RSFELDNKLE PEYKVKLAEE LGLQPKQVAI WFQNRRARWK TKQLERDYGI  120
LKSNFDHLKV EYSNLKQENE ALTMKVRELK AKLIRVESNE SEKDESPNSE VRDRGASESN  180
SCGMLKEESN VESPLCFNGS FPSSSPVKNW LHQSDSKGSP DRTFQNHLMR MEEQSFYSIN  240
EFYSFFSVDQ CPTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1053520.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346119.11e-136homeobox-leucine zipper protein ATHB-6-like isoform X1
SwissprotQ940J19e-47ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A2Z6PTJ01e-130A0A2Z6PTJ0_TRISU; Uncharacterized protein
STRINGXP_007146109.11e-128(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-49homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]