PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v0841450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 23934.6 Da PI: 7.5476 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.8e-20 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + ++r++lg+f+tae+Aa+a++ a+++l+g Lj6g3v0841450.1 28 PRYRGVRKRP-WGRFAAEIRDPMK---KARVWLGTFDTAEDAARAYDTAARNLRG 78 68********.**********843...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.06E-31 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.5E-13 | 28 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 29 | 88 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.131 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 29 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 29 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGKGGAAAGA GAGELDGPGP RPVFFQEPRY RGVRKRPWGR FAAEIRDPMK KARVWLGTFD 60 TAEDAARAYD TAARNLRGPK AKTNFPLSTP FYHQHDNAAA DPFADHRFYP AAGAGAGAGN 120 VFHDHQRPTS SGMSSTVESF SGPRPVRPPA PPVAAARRYP RSPPVVPEDC RSDCDSSSSV 180 VDDGDGDNVA SSSLLPIRRQ PLPFDLNAPP AEDAGDDLHC TALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 30 | 89 | 6 | 66 | ATERF1 |
3gcc_A | 3e-22 | 30 | 89 | 6 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9106 | 0.0 | floral bud| pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v0841450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635459.1 | 1e-99 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 7e-51 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A072UXV4 | 3e-98 | A0A072UXV4_MEDTR; Ethylene response factor | ||||
STRING | XP_004513889.1 | 2e-95 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-27 | ethylene responsive element binding factor 3 |
Publications ? help Back to Top | |||
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