PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0056720.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 170aa    MW: 19440.6 Da    PI: 8.6008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0056720.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000532951123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C++ F++   L  H++ H
  Lj6g3v0056720.1 29 YDCTFCKRGFTNARALGGHMNIH 51
                     88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.48E-72656No hitNo description
Gene3DG3DSA:3.30.160.601.2E-42655IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5932956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVRSETTTFS KESDQQEVQD YSEGTKRLYD CTFCKRGFTN ARALGGHMNI HRKERTKAKQ  60
RMPNSSLVTQ VSSQSSSYFC ILESPRNYNM CLQPSATNPT YHPPAYTFQY DFLNTRSQSL  120
IRNRDVLGTN LSLQIGSSHV ATDQARRGIE RDGEGVDLEL RLGHHLYSDY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0056720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096990.0AP009699.1 Lotus japonicus genomic DNA, clone: LjT24A04, TM1735, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467115.11e-71zinc finger protein 11
TrEMBLA0A072VHQ43e-70A0A072VHQ4_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004497834.12e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein