PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v2258590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 259aa MW: 28016.7 Da PI: 11.9621 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 24.4 | 9.4e-08 | 95 | 118 | 3 | 26 |
TCP 3 gkkdrhskihTkvggRdRRvRlsa 26 +kk +++++h+kv+gR+RR+R++ Lj5g3v2258590.1 95 VKKPPSKDRHSKVDGRGRRIRMPX 118 79********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MCPPPVSTSS CRSIIRPLFP LSPSIQSLPH STLNSSSSSS SSSSSSSIQI PRNSHCNKPY 60 SHFSLHLLTM SSSDGTTNGS MIDPQRTNQQ QQLSVKKPPS KDRHSKVDGR GRRIRMPXXX 120 XXXXXXXXXP LTPPPPPPPA PAPPPPASPP SLSRSAAPPT TPRSLLLRLT TNPCLLLLLL 180 RSFSGSVYAP TMIPPPPPRM TLLDTRLLAL LLLLVCGLFL LGLILDRYGA LLLPPPPRRK 240 WWGTRPCPGP VSAKRTPSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v2258590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 2e-12 | TCP family protein |