PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2258490.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 300aa    MW: 34660 Da    PI: 4.8003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2258490.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-16444343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i+ + nr++tf kR+ g+lKK +E S+LCd+e+a ii++++
  Lj5g3v2258490.1  4 IKKEKNRETTFKKRKDGLLKKFNEFSILCDVEAAAIIYAPN 44
                     8999*******************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.67E-20154No hitNo description
SuperFamilySSF554551.57E-17178IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-12153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.797145IPR002100Transcription factor, MADS-box
PfamPF003191.2E-16444IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELIKKEKNR ETTFKKRKDG LLKKFNEFSI LCDVEAAAII YAPNSAEPET WSWPPEDPSK  60
FHHVIQKYQN TTSDRRAKMF GVHEYFDDRI KKVEGEISKL YKNKMKVMYP EWDASLNNLG  120
EEQLRIMINF LDAKLDACNA RMNMLKGKEV AESIPPFLDP NQNSYLNYLM MQNMNPIGDS  180
YNTFQIGESS QPASMLQLMG NDVVTGDDPR TGGVLEVKEY GEAEANNQIQ NMNPAGYYDG  240
NYIQAMQQQH ALSSENLHDQ GAYQTLTDYP LYDEFYQPNG LYDTDMQLQA QIFNYMHGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2258490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344257.17e-74agamous-like MADS-box protein AGL80
TrEMBLK7L5R61e-71K7L5R6_SOYBN; Uncharacterized protein
STRINGGLYMA08G10111.12e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.16e-20AGAMOUS-like 82