PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v2217180.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 455aa MW: 50709.8 Da PI: 5.1691

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v2217180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	168	200	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 ++ k rr+ +NReAAr+sR+RKka++++Le+ Lj5g3v2217180.1 168 EDQKTLRRLVQNREAARKSRLRKKAYVQQLENS 200 577899*************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-5	167	235	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.301	169	213	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-7	170	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.97E-7	171	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-7	173	208	No hit	No description
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.8E-27	254	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MQSFQTTTES SSPLYTHSSF FLRGDDDTTQ NPTLFWDIQR SFQQQDAVDL SSSCSFSPGS 60 AFGAKSSDVA VLASNLQCAT FNTNIGGGCA STGEVCIETG QEPMFQRGTI FNAVPLGNEN 120 WGDSGMADNS QQTEDTSTDV DTDDKNQQEP LVVVMDSKDQ SKAKVKDEDQ KTLRRLVQNR 180 EAARKSRLRK KAYVQQLENS RVRLAQMEQE LQRVRQQDVS GITGDHAHSV VANGVLAFDM 240 DYARWVDEHQ HLINGIRSAI NSQMVDKELH LLVDGVMAHY DELCRLKSIG AKADIFHMLS 300 GMWKTPVERC FMWLGGYRSS ELLKIVRNHL EQLTDQQLIG IYNLQQSSQQ AEDALSQGME 360 ALQQSLSETL SSTSLGPTCS GNVAEYMGQM AIAMAKLASL ESFLHQADLL RQQTMHQLQR 420 ILTTNQAARA LVVINDFISR LRALNSLWSA CPKEY

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MQSFQTTTES SSPLYTHSSF FLRGDDDTTQ NPTLFWDIQR SFQQQDAVDL SSSCSFSPGS  60
AFGAKSSDVA VLASNLQCAT FNTNIGGGCA STGEVCIETG QEPMFQRGTI FNAVPLGNEN  120
WGDSGMADNS QQTEDTSTDV DTDDKNQQEP LVVVMDSKDQ SKAKVKDEDQ KTLRRLVQNR  180
EAARKSRLRK KAYVQQLENS RVRLAQMEQE LQRVRQQDVS GITGDHAHSV VANGVLAFDM  240
DYARWVDEHQ HLINGIRSAI NSQMVDKELH LLVDGVMAHY DELCRLKSIG AKADIFHMLS  300
GMWKTPVERC FMWLGGYRSS ELLKIVRNHL EQLTDQQLIG IYNLQQSSQQ AEDALSQGME  360
ALQQSLSETL SSTSLGPTCS GNVAEYMGQM AIAMAKLASL ESFLHQADLL RQQTMHQLQR  420
ILTTNQAARA LVVINDFISR LRALNSLWSA CPKEY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269\|PubMed:9990857}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v2217180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213985.1	0.0	transcription factor TGA2.3 isoform X1
Swissprot	Q9SX27	1e-152	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V7BDA6	0.0	V7BDA6_PHAVU; Uncharacterized protein
STRING	XP_007142889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-144	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]