PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2063130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13078.4 Da    PI: 11.2685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2063130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.7e-241360249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i  +s rqvtfskRrng++KKA+EL++LC++e  +iifs++gk++ +
  Lj5g3v2063130.1 13 KIIKESSRQVTFSKRRNGLFKKASELCTLCGVELVLIIFSPSGKVFSF 60
                     5667899**************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.866464IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-30463IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-28579IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-20626IPR002100Transcription factor, MADS-box
PfamPF003198.9E-261360IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-202641IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-204162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MKGRGRKIIE IKKIIKESSR QVTFSKRRNG LFKKASELCT LCGVELVLII FSPSGKVFSF  60
GHPGVEDVIQ RYLSQDPPQP LKSCGTSRFN GTLTCVSSTR ISRISTTMLA LARIMGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-18580176Myocyte-specific enhancer factor 2A
3kov_B4e-18580176Myocyte-specific enhancer factor 2A
3kov_I4e-18580176Myocyte-specific enhancer factor 2A
3kov_J4e-18580176Myocyte-specific enhancer factor 2A
3p57_A4e-18580176Myocyte-specific enhancer factor 2A
3p57_B4e-18580176Myocyte-specific enhancer factor 2A
3p57_C4e-18580176Myocyte-specific enhancer factor 2A
3p57_D4e-18580176Myocyte-specific enhancer factor 2A
3p57_I4e-18580176Myocyte-specific enhancer factor 2A
3p57_J4e-18580176Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2063130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061421e-80AP006142.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT08A24, TM0250, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592558.16e-35agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-28AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K3LZS03e-34A0A2K3LZS0_TRIPR; MADS-box transcription factor
STRINGAES628092e-34(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-25AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]