PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1811810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GATA | ||||||||
Protein Properties | Length: 351aa MW: 38050.8 Da PI: 6.2368 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 261 | 294 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Lj5g3v1811810.1 261 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 294 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 9.4E-73 | 3 | 344 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.583 | 255 | 291 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-16 | 255 | 305 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 259 | 318 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 259 | 292 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.30E-14 | 260 | 317 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 261 | 286 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-15 | 261 | 294 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVGPNFMDEL DCGSFFDHID DLLDFPVEDV DGTATTLPSA AAAAANCTSL ASIWPPETDS 60 FPGSDSVFSG NSGSDLSAGL SVPYEDIVQL EWLSNFVEDS YGGSLTMKKV EHQQPSSTIT 120 TKEDSVHNQF QTSSPVSVLE SSSSCSGGKP AEIYIPVPCG RARSKRPRPA SFNPRSAMQL 180 ISPASSFIGE NNTMKPNYHH HVRTSSDSEN FAESQPVITK MMMPKQASGE PKKKKKIKVP 240 LPLAPSDGNN IQNGSQPVRK CMHCEITKTP QWRAGPMGPK TLCNACGVRY KSGRLFPEYR 300 PAASPTFCPA VHSNSHKKVL EMRCKGEDSG LADQPELIPN TNSSLTLEEY M |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 168 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25255 | 0.0 | floral bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1811810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229701.1 | 0.0 | GATA transcription factor 8 isoform X2 | ||||
TrEMBL | A0A151SE25 | 1e-179 | A0A151SE25_CAJCA; GATA transcription factor | ||||
STRING | XP_007143712.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 8e-42 | GATA family protein |