PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1351980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 136aa MW: 15078.2 Da PI: 5.2261 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00036 | 4 | 38 | 19 | 55 |
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++L +llP+ + p++ + + +A++YIksL+ Lj5g3v1351980.1 4 LYSKLNSLLPNyN---PKEAVPLPDQIDEAINYIKSLE 38 589********66...9999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-6 | 2 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-6 | 2 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MKILYSKLNS LLPNYNPKEA VPLPDQIDEA INYIKSLEEK MKMAQEKKES LGGSNKRSRG 60 SCSSSISATA VSKSPQLEVH ETGSSLEVVL TCGLDNQFIF YEIIRILQEE NIDVRSANSS 120 MAGDSMLHVV HAEVYI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1351980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540915.1 | 3e-67 | transcription factor bHLH162 | ||||
Refseq | XP_028192200.1 | 3e-67 | transcription factor bHLH162-like | ||||
TrEMBL | A0A445HNR9 | 9e-67 | A0A445HNR9_GLYSO; Transcription factor bHLH162 isoform B | ||||
STRING | GLYMA12G12880.1 | 1e-66 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-19 | bHLH family protein |