PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0659440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 202aa MW: 21297.3 Da PI: 9.8049 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.9 | 4.6e-35 | 45 | 131 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+ +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i++ tgt++ +a ++++ sss+ ++s + Lj5g3v0659440.1 45 ATTTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAVTGTGTVPAAPISTVAPSSSTPAPSVS 131 67899***********************************************************55555333333333333333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-29 | 50 | 144 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.568 | 51 | 105 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTSDLVIHPF PHPTTTTVAT AGTTTITTGT ASNSKAKLAV TRKPATTTRS TKDRHTKVNG 60 RGRRVRMPPL CAARIFQLTR ELGHRSDGET IEWLLRHAEP SIIAVTGTGT VPAAPISTVA 120 PSSSTPAPSV SCPVQAVSEV SAAGMGMGMF SVQPSCRLDL CQPAGMDYPA VSGYRNMPFT 180 ALLLQPATAA EENQQEQALS KQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0659440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027363101.1 | 2e-80 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 3e-43 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A1S2Y0X3 | 1e-76 | A0A1S2Y0X3_CICAR; transcription factor TCP11 | ||||
STRING | XP_004497526.1 | 2e-77 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-42 | TCP family protein |