PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0404820.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 310aa    MW: 34435.3 Da    PI: 9.9127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0404820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.2e-19175208134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+t++TplWR+gp+g+k+LCnaCG+++rk +
  Lj5g3v0404820.1 175 CSDCNTSSTPLWRSGPNGPKSLCNACGIRQRKAR 208
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-12169209No hitNo description
PROSITE profilePS5011413.125169205IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-17169220IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.25E-13174228No hitNo description
PfamPF003201.0E-16175208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTPVSLNPPG PSIQGQNHLF NSLNNQDYHA SLFNILDRRQ GIGIGELREN DHQDDKLVVW  60
HDGSSSSSSS NHLYNSTFIS PQPVMDNPSS STCDPNLSFS KMEEEDIKNV HGSAKWMSSK  120
MRLMKKMMST PATDKANNST TIPISPRIQN QGHENRYSQR SPRNNNNSSN TTRVCSDCNT  180
SSTPLWRSGP NGPKSLCNAC GIRQRKARRA MAEAANGLAT PINTASTKTR VHHNKEKKPR  240
ANHFAQFKNK SKSTSSNAGS SQETKKLECF KDFAISLRNN STFQQVFPRD EVAEAALLLM  300
DLSCGYVHSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0404820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044860.0AP004486.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT05B20, TM0019a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368978.11e-142putative GATA transcription factor 22 isoform X2
TrEMBLA0A0S3RPP81e-115A0A0S3RPP8_PHAAN; Uncharacterized protein
TrEMBLA0A371I3C91e-115A0A371I3C9_MUCPR; Putative GATA transcription factor 22 (Fragment)
STRINGGLYMA14G10830.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-21cytokinin-responsive gata factor 1