PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0335560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 419aa    MW: 45333.3 Da    PI: 6.5796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0335560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-10260308355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Lj5g3v0335560.1 260 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 308
                      58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17255326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-11255312No hitNo description
PROSITE profilePS5088815.485257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16258325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7260308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGGQENAMRF QHGKESIMSA NVSEMAISSV SLAKPSEAAN PFLASHAWDP LVSLSQAQTF  60
GGSSMVSHGE YANANASYPL VMENQGMGST SHLVQYMSDS NLRGMVPKIP SYGSGSFSEM  120
VGSFGQHGSG DITNTGYPQH YNAGIERVPI NCEHSQVEDS TTEEGAPGSA PSGNRRKRGL  180
DQNSTFNPNK NAEGDELKDS PGKISDGSKE HEKKPKLERN ASADLRGKQS VKQAKDNSES  240
GEGSKDNFIH VRARRGQATN SHSLAERVRR EKISERMRLL QELVPGCNKI TGKAVMLDEI  300
INYVQSLQQQ VEFLSMKLAT VNPEMNFDLE RILSKDILQS RIGHGIGGYG AAGGISSFHP  360
FPNSSFQGIL AGMPGSSTQY PPLPQNVLDH EFQSFYGMGY DSNTVLDNSG PNGRLKTEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0335560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160954.10.0hypothetical protein PHAVU_001G031300g
TrEMBLA0A371E9P60.0A0A371E9P6_MUCPR; Transcription factor bHLH74 (Fragment)
TrEMBLV7CU850.0V7CU85_PHAVU; Uncharacterized protein
STRINGXP_007160954.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-82bHLH family protein