PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0309090.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 557aa    MW: 64898.4 Da    PI: 7.0839
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0309090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-20423508189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      kf+ +Y+ +vGF  rk++++++ ++g+i + +fvC +eg r+++k++  k+ + r+etrt+Cka+l +k++  gk  v+++ +eHnH l
  Lj5g3v0309090.1 423 KFWADYGGRVGFGARKQYTHRK-KDGSISSCRFVCCNEGLRKPDKRD-YKTINARPETRTDCKARLGLKNM-CGKLIVHDFMEEHNHIL 508
                      69**************998886.8999*****************999.99*********************.9**************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078991.2E-52160398IPR012474Frigida-like
PfamPF031019.7E-16423508IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MHNMNKEQER KKEELEIIFR KVARCTKELK TKEEKLDAIS KLIDGQSKEL DKVISTRAAP  60
CAQMKDFESM KKQLDGRIKE FNFKEEEFRR QVKVIESNFG SQAKDLESKR KQLEEQLKEF  120
KLKEKQLKCQ EKELESKNKY FDSLEKELKS QKKQLEDEPE LLENEILVDL EATSDPSKVV  180
LDIIQNPIVS QIKNGDDAVI MDRSHIFLLQ QLLRISPQIK PHVREDAMKL ALDLKANMRT  240
STENSLEVLG FVLLLSIYGL VPTFDEYEVL KLFEFAAQHK QVVELFQTLG FVDKISDFVQ  300
KLINKQQYIE AVRFICAFKL VDKNQPVDLL REYVQNAKRI SEISCKNTNS LEIKDKARDH  360
EIATLTNVLQ CISDNNLESE DLFDEIKDRI LELNKQKDCL SKMEEDWKPK LGVAFDSFED  420
AWKFWADYGG RVGFGARKQY THRKKDGSIS SCRFVCCNEG LRKPDKRDYK TINARPETRT  480
DCKARLGLKN MCGKLIVHDF MEEHNHILYL QETTHMLSSQ GKVSEVQCHQ NDLADDAELH  540
RSKGSVECQL SKRRKIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0309090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096210.0AP009621.1 Lotus japonicus genomic DNA, clone: LjT39G23, TM2115, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343311.11e-119myosin-11
TrEMBLA0A2K3LK391e-109A0A2K3LK39_TRIPR; FRIGIDA-like protein (Fragment)
STRINGXP_004487158.11e-100(Cicer arietinum)
STRINGAES635921e-102(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-14FAR1 family protein