PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0035460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17952.1 Da    PI: 10.2829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0035460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.7e-121150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i +++ r++++ kR++ i+KK +EL +L ++e++vii s+
  Lj5g3v0035460.1 11 ITDDMARKISYNKRKKNIIKKVSELTTLYGVEACVIIPSP 50
                     88999********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.06E-18179IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.834149IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-13160IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-121150IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDRKKVKLAY ITDDMARKIS YNKRKKNIIK KVSELTTLYG VEACVIIPSP FDSKPEILPN  60
VKGAKKVIER YQNTPVKKQN MTLNQESFIT QMTSKSQDKL SKVHRQIREK ELTVPVFNCV  120
KDGALPEGLT VSDINDIKMH LEKMMKDVND EIAKRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0035460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046250.0AP004625.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT14E05, TM0089b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496299.11e-48agamous-like MADS-box protein AGL80
TrEMBLA0A1S2XY103e-47A0A1S2XY10_CICAR; agamous-like MADS-box protein AGL80
STRINGXP_004496299.15e-48(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-30AGAMOUS-like 80