PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3030590.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 381aa    MW: 42118.3 Da    PI: 7.4785
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3030590.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-06134154526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck  d C +aHg
  Lj4g3v3030590.1 134 ACPDFRK-GSCKKADACEYAHG 154
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0881118IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.202130156IPR000571Zinc finger, CCCH-type
SMARTSM0035614164187IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643164188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MIGEHRRANP TVHVPPWTIH DDPTAEIYSP YFAADGIAVD GGEFSPQYMH EALAALQRYL  60
PSNEVDAESD SDALGRDSDA PVDAYSCDHF RMYEFKVRRC ARGRSHDWTE CPYAHPGEKA  120
RRRDPRKFHY SGTACPDFRK GSCKKADACE YAHGVFECWL HPARYRTQPC KDGTSCRRRV  180
CFFAHTPEQL RLVPQQSPRS MNSADSYDGS PMRNAAAAMP FMSSPVLISS PPVSPRGDSP  240
PMSPMAQSLS RSLGSSSINE MVASLRLGKM KSMPPNRNIQ MGSPGFGSPR GSMLRLRPGF  300
CSLPTTPTQA PVPGRSGVSY FDLWDQDLEE EPVMERVESG SVIRAKMFEK LSKENSLDRS  360
GSDSGQTGGA PDVGWVSELV K
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.117000.0cell culture| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3030590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513076.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-144C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S2Z1180.0A0A1S2Z118_CICAR; zinc finger CCCH domain-containing protein 20
STRINGXP_004513076.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-134C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]