PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2691870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29045.7 Da PI: 9.6924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.3e-09 | 69 | 110 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE ell ++ +++++g +W+ I++++g+gR+ ++ Lj4g3v2691870.1 69 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVDEI 110 69***********************************98765 PP | |||||||
2 | Myb_DNA-binding | 27.9 | 5.3e-09 | 206 | 248 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck ++ Lj4g3v2691870.1 206 WSAVQERALVQALKAFPKEasqRWERVAAAVP-GKTVNQCKKKF 248 ********************************.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 62 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.899 | 63 | 118 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.0E-7 | 67 | 120 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-8 | 69 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-5 | 70 | 112 | No hit | No description |
SuperFamily | SSF46689 | 2.84E-9 | 200 | 251 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.604 | 201 | 256 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-8 | 202 | 254 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-6 | 206 | 251 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-7 | 206 | 248 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.08E-7 | 206 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSLDIEHLRG LCEKMEDRKE LEQAEVIRDA LSCKEGMADV KYEKTIQQNG SIKANGSRGS 60 KSKTEKREKP WSKEEIELLR KGMQKYPKGT SRRWEVISEY IGTGRSVDEI MKATKTVLLQ 120 KPDSSKAFDA FLEKRKPAVS IASPLTTREE VEGAPTNPET GKPENSDASS KKDNLEDSQG 180 KSTDDQNSTA VAANGVSSSS SDQDIWSAVQ ERALVQALKA FPKEASQRWE RVAAAVPGKT 240 VNQCKKKFTA MKESFRNKKG AV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9383 | 0.0 | floral bud| pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2691870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010521 | 0.0 | AP010521.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT39N07, TM1498, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015958810.1 | 1e-123 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_016197268.1 | 1e-123 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_025645640.1 | 1e-123 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A444ZC28 | 1e-122 | A0A444ZC28_ARAHY; Uncharacterized protein | ||||
STRING | XP_007148540.1 | 1e-115 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6083 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 2e-86 | DnaJ domain ;Myb-like DNA-binding domain |