PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2400600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 151aa MW: 17235 Da PI: 9.6835 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.8 | 2.8e-13 | 6 | 45 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r++++ kR++ i+KK +EL +LC++e++ ii s+ Lj4g3v2400600.1 6 ITDDKARKISYNKRKKNIIKKVSELTTLCGIEACAIISSP 45 889999*******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.713 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-11 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-19 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-14 | 6 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MKLAYITDDK ARKISYNKRK KNIIKKVSEL TTLCGIEACA IISSPFDSKP EIWPDVEGAK 60 KVVERYQNTP VKKQNMTLNQ ESFMTQTTSK AQDKLSKARR QIQEKELTMS VFNCMKDGAL 120 PAGLTMTDIN DISMHIDKMM KEVNDEIAQR N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2400600.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004625 | 1e-171 | AP004625.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT14E05, TM0089b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496299.1 | 1e-51 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S2XY10 | 3e-50 | A0A1S2XY10_CICAR; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004496299.1 | 6e-51 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-33 | AGAMOUS-like 80 |