PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj4g3v2191500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21131.3 Da PI: 8.4697 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.2 | 3.4e-14 | 68 | 157 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k ++ps+v+ +l lpkkf+e + +k ++ + ledes + ++ k+ + + l++GW++F a++L e D++vF+l++ ++f +v Lj4g3v2191500.1 68 VKHMLPSHVTGGFWLGLPKKFCELYL-PK-ADTFIALEDESRELYQAKY--LAEK--VGLSGGWRGFSIAHNLLEMDVLVFHLIQPHKF--KVY 153 68899*****************8884.43.4468***************..4444..55*************************98888..888 PP EE-S CS B3 96 vfrk 99 ++r+ Lj4g3v2191500.1 154 IVRS 157 8775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-18 | 59 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.79E-21 | 60 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-23 | 65 | 156 | No hit | No description |
SMART | SM01019 | 2.4E-18 | 67 | 158 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.56 | 67 | 158 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-12 | 68 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MVEAVLKTPS DRENPSKGTS RNAQKKRKSG GESSICSRST FNNEAQLAAV ERAKEIQASL 60 SPEFPSIVKH MLPSHVTGGF WLGLPKKFCE LYLPKADTFI ALEDESRELY QAKYLAEKVG 120 LSGGWRGFSI AHNLLEMDVL VFHLIQPHKF KVYIVRSQKP DEVDGALGLL KLDKCEKAPK 180 NELDMESIAG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj4g3v2191500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237115.1 | 2e-71 | B3 domain-containing protein Os01g0234100 isoform X4 | ||||
TrEMBL | A0A151RRB3 | 2e-68 | A0A151RRB3_CAJCA; B3 domain-containing protein Os01g0234100 family (Fragment) | ||||
STRING | GLYMA01G45623.1 | 1e-66 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27145 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-44 | B3 family protein |