PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2140320.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 325aa    MW: 36075.6 Da    PI: 9.3541
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2140320.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19187220134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Lj4g3v2140320.1 187 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 220
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-13179221No hitNo description
SMARTSM004017.9E-20181232IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.545181217IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-15185220IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.50E-14186218No hitNo description
PfamPF003205.2E-17187220IPR000679Zinc finger, GATA-type
PROSITE patternPS003440187212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MIPAHRPSVS PSLMPLDLNQ DDQNHDELFS PNHLVASSSF SSISYPILFN PPDQDQEGSY  60
CWEPKHSPNE EEDEKIIIPS SGSWDNSAAE KHGSSSKHKL RVWKREERDG ENLEEAHEDG  120
SLSVKWMSSK MRIMRKMIVP DQRGTSYAVA ENTMQRFEDQ KLPLSPVGTD NSSNNYSNQS  180
FNTVRVCADC NTTKTPLWRS GPRGPKSLCN ACGIRQRKAR RAMAAAAAAA SGDGTILVTA  240
ESSVKNRNKL VKKKDKTKVE SAPPVAQIKK KHRANKPSQS KKKFGFEDLT LSLSKNLASL  300
QQVFPQDEKE AAILLMALSY GLVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2140320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205216.11e-117GATA transcription factor 21
TrEMBLA0A151R3021e-115A0A151R302_CAJCA; Putative GATA transcription factor 20
STRINGGLYMA17G06290.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-20cytokinin-responsive gata factor 1