PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2140210.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 23735.2 Da PI: 9.1177

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2140210.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.8e-18	66	120	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Le++F+ + +++ +++ LA+kl+L++rq+ vWFqNrRa+ k Lj4g3v2140210.1 66 RKKLRLTTEQSAMLENCFKLHTTLNPVQKQALADKLNLKTRQIEVWFQNRRARTK 120 678899***********************************************98 PP
2	HD-ZIP_I/II	111	7.7e-36	66	154	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LE++F+ +++L+p +K++la +L+l++rq++vWFqnrRARtk+k++E+d+e Lk+++++l++en+rL+ke +eLr + Lj4g3v2140210.1 66 RKKLRLTTEQSAMLENCFKLHTTLNPVQKQALADKLNLKTRQIEVWFQNRRARTKLKKTEVDHELLKKQCQNLSDENRRLKKELQELR-A 154 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-18	49	123	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-17	51	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.082	62	122	IPR001356	Homeobox domain
SMART	SM00389	4.6E-15	64	126	IPR001356	Homeobox domain
CDD	cd00086	7.01E-12	66	123	No hit	No description
Pfam	PF00046	9.7E-16	66	120	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
SMART	SM00340	1.4E-14	122	165	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEDDEECSTG LCLGLGMGGY MPKKENQKVN KVERFMYLEK IPERLQHYPT KSTDSDHNTD 60 NKNTCRKKLR LTTEQSAMLE NCFKLHTTLN PVQKQALADK LNLKTRQIEV WFQNRRARTK 120 LKKTEVDHEL LKKQCQNLSD ENRRLKKELQ ELRALKVGES SALCIQLSKR ATLAMCSSCQ 180 KLLKLNEGNN NFSNNLKSES DIDIE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2140210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006417	1e-152	AP006417.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05D12, TM0303, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027333512.1	7e-81	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-45	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A371DYX2	3e-76	A0A371DYX2_MUCPR; Homeobox-leucine zipper protein HAT14 (Fragment)
STRING	GLYMA13G00310.1	3e-75	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5664	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-47	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]