PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1726060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WOX | ||||||||
Protein Properties | Length: 160aa MW: 18048.9 Da PI: 11.0941 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.7 | 6.1e-16 | 29 | 89 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ Lj4g3v1726060.1 29 RSRWTPKPEQILILESIFNSgMVNPPKEETFRIRKLLekfgTVGDANVFYWFQNRRSRSRR 89 89*****************99******************9******************997 PP | |||||||
2 | Wus_type_Homeobox | 107.2 | 9.9e-35 | 28 | 91 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Lj4g3v1726060.1 28 VRSRWTPKPEQILILESIFNSGMVNPPKEETFRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 91 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-15 | 22 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.948 | 25 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-6 | 27 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 29 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.2E-14 | 29 | 89 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEDQEGESPD PNSPTQGSSS SESRTGPVRS RWTPKPEQIL ILESIFNSGM VNPPKEETFR 60 IRKLLEKFGT VGDANVFYWF QNRRSRSRRR QRQMQASAAQ PVVQTHFLST PSTTTSTLQV 120 LLLLPKVLVL HLSLLILLHL TSLVPLHHAV VVVVVVFKKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1726060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022719652.1 | 1e-40 | WUSCHEL-related homeobox 11-like | ||||
TrEMBL | A0A1R3HBW2 | 6e-39 | A0A1R3HBW2_COCAP; Uncharacterized protein | ||||
STRING | EOY10442 | 1e-38 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 3e-35 | WUSCHEL related homeobox 11 |