PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1721910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 363aa    MW: 40074.7 Da    PI: 9.0599
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1721910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.56e-31541813124
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+++k+ i++l+ ++ ++ s+++ +++ + ++n++ +        
  Lj4g3v1721910.1  54 GGKDRHSKVCTVRGLRDRRIRLSVPTAIELYDLQDRLGLSQPSKVVDWLLEASKTDIDKLPPLQIPNCSFSQFHHQDQYSGNDRLSlgvgglfy 147
                      79*************************************************************6666666643444444443444467888875 PP

              TCP  89 ...kaaksaakskksqksaasalnlakesrakararare 124
                         +    a +s++  +++  +++++  sr k ++++ e
  Lj4g3v1721910.1 148 dgtS----A-SSQSLMAKSRYNWDVDLVSRLKGKEDESE 181
                      4431....1.22222333333355555555555555333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.36955113IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-2755156IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTENSSKGYD QMKQEGTNEV KTERLISSNK ALSTSRQWTA FRNPRIVRVS RALGGKDRHS  60
KVCTVRGLRD RRIRLSVPTA IELYDLQDRL GLSQPSKVVD WLLEASKTDI DKLPPLQIPN  120
CSFSQFHHQD QYSGNDRLSL GVGGLFYDGT SASSQSLMAK SRYNWDVDLV SRLKGKEDES  180
EKGKCLMKET QDSAQKLFPI GINYNSSSSL PGFLNNAMTY NINSFQSEPS SSLSLSQFGS  240
HGVLFPYLQP DSNSMLQYPS NNNGSVVPFS SSLSASQLLF CPSSSATTPT SLFGNPHAPL  300
MTNSSAESSD PRQYNSNHVH TLSSGSSLMP HPFMPSLHPF SNSPLSRRLP TPFSSKLLDS  360
DNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1860114155Putative transcription factor PCF6
5zkt_B5e-1860114155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.41090.0pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1721910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019438945.11e-110PREDICTED: transcription factor TCP5-like
RefseqXP_019438947.11e-110PREDICTED: transcription factor TCP5-like
TrEMBLA0A4P1RXQ81e-109A0A4P1RXQ8_LUPAN; Uncharacterized protein
STRINGXP_007138359.14e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5