PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1614670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 318aa    MW: 35788.5 Da    PI: 4.4157
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1614670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-1984137356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ +q++ Le+ Fe ++++  ++++++Ak lgL+ rqV +WFqNrRa++k
  Lj4g3v1614670.1  84 KKRRLSVDQVQFLEKSFEVDNKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWK 137
                      566899***********************************************9 PP
2HD-ZIP_I/II127.94.3e-4183174192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrls +qv++LE+sFe ++kLep+rK+++a++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ ++L ke++ L++e++
  Lj4g3v1614670.1  83 EKKRRLSVDQVQFLEKSFEVDNKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLHSSFESLKSNYDNLLKEKDMLKAEVA 174
                      69**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1969141IPR009057Homeodomain-like
PROSITE profilePS5007117.11979139IPR001356Homeobox domain
SMARTSM003891.5E-1982143IPR001356Homeobox domain
PfamPF000462.8E-1684137IPR001356Homeobox domain
CDDcd000863.30E-1884140No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1986147IPR009057Homeodomain-like
PRINTSPR000313.0E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000313.0E-5119135IPR000047Helix-turn-helix motif
PfamPF021834.8E-16139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAGGRVFSGG SAAPANVSDT SLLLQNQPPD SSLFLSTSAS FLGSRSMVSF ADNKLGQTRS  60
FFSAFDLDEN GDEVMDEYFH QSEKKRRLSV DQVQFLEKSF EVDNKLEPDR KTKIAKDLGL  120
QPRQVAIWFQ NRRARWKTKQ LEKDYDSLHS SFESLKSNYD NLLKEKDMLK AEVASLTEKV  180
LARENLKQVE SETKGLVEPP QRPLLDSVSE GEESKVSVGA CKHEDISSAR SESLDSDSPR  240
YRDGYGVNSA VLETCDSSYV VEPDQSDMSQ DEEDNLTKTL LPPYMFSKLG DMDYSDPPES  300
SCNFGFPEED HALWSWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.12120.0cell culture| floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1614670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1380990.0BT138099.1 Lotus japonicus clone JCVI-FLLj-20A10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331244.11e-166homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLI1JZS91e-149I1JZS9_SOYBN; Uncharacterized protein
STRINGGLYMA05G01390.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-43homeobox 1