PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1600420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 26302.6 Da PI: 4.2394 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 22.1 | 4.2e-07 | 1 | 43 | 58 | 100 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s++ +A+ r + Pv+G+++ i +lq q+ +++el+++ ++ Lj4g3v1600420.1 1 MDSIIIQANYRDKYPVHGCCEEIGRLQYQIWLVEEELHAVYQQ 43 79***********************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 6.9E-5 | 1 | 40 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDSIIIQANY RDKYPVHGCC EEIGRLQYQI WLVEEELHAV YQQLEMCRQQ QQHQQHNDGM 60 ALPDDVTSQL ELGMAPRSNN ALQLFNHPPP QQQSYNTVAA ISQQHSYSNS NSVDYNNNSL 120 YMDSKDNVTN PLWVQYQYQN NNSNDSVAMQ TQLVASQQPL AIQQEVVEDY DEMHPFFDTV 180 DDRQSYVYSK EAYESSSEES LKDTRKGSEH VSENELKSAA ACFSLTSVN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6003 | 1e-115 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1600420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225931.1 | 1e-112 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A371F2W3 | 1e-116 | A0A371F2W3_MUCPR; LOB domain-containing protein 27 (Fragment) | ||||
STRING | XP_004508794.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-10 | LOB domain-containing protein 27 |