PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1327800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 367aa    MW: 38524.7 Da    PI: 5.8614
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1327800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.57.1e-36821882103
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnss 86 
                      ++k+++++++hTkv+gR+RR+Rl+a+caar+F+L++eLG+ +d++t+ WLl+ a+ ai+e+tgt++ +a ++         +++sss+s  +s 
  Lj4g3v1327800.1  82 TAKRSSTKDRHTKVEGRGRRIRLPATCAARIFQLTRELGHRSDGETVRWLLEHAENAIIEATGTGTVPAIAVsvggalkipTTSSSSVSLYHSD 175
                      789*************************************************************666663333322222111111111111111 PP

              TCP  87 sgkaaksaakskksqks 103
                      ++  +++  + kk++++
  Lj4g3v1327800.1 176 EA--SAA--NAKKRKRP 188
                      11..111..11111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2987183IPR005333Transcription factor, TCP
PROSITE profilePS5136926.81688142IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSGVTSYHEM DQEDDGFNTD LSTSGGDPPE TTTNSHGVSE QALPPKEEAN YSDPDPNPEA  60
HPSSLGIVPV MPVAPMAVPI KTAKRSSTKD RHTKVEGRGR RIRLPATCAA RIFQLTRELG  120
HRSDGETVRW LLEHAENAII EATGTGTVPA IAVSVGGALK IPTTSSSSVS LYHSDEASAA  180
NAKKRKRPSS SEFIDASDAV SLPSGRAPVQ AAVPQGLIPV WAVGNGNMVV PANAFWMFPP  240
PQAAAPNLTV SSNQQQPQMW ALSQPVMAAN FPEAWPGAAG YSDNSSISAV STSTVGPMVA  300
TKSSLAPSVS SSSSENHKNG DCGGGGNSNG KTQMLRDFSL EIYDKQELQF MGGSGTLSLR  360
QQNSSNQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.135830.0cell culture| protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1327800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103470.0AP010347.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT11L10, TM1734, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336417.11e-122transcription factor TCP9-like
RefseqXP_028762754.11e-122LOW QUALITY PROTEIN: transcription factor TCP9-like
SwissprotO646476e-66TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A445G6B31e-116A0A445G6B3_GLYSO; Transcription factor TCP9
TrEMBLI1MUS21e-116I1MUS2_SOYBN; Uncharacterized protein
STRINGGLYMA17G14160.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-64TCP family protein