PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1073610.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 398aa    MW: 42961.4 Da    PI: 6.5141
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1073610.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1703.8e-22294356163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+ +++  +++l se+
  Lj4g3v1073610.2 294 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRSEVTQIRSDYEQLLSEN 356
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.1E-29196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.8E-46135262No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-18287352No hitNo description
SMARTSM003385.4E-22294358IPR004827Basic-leucine zipper domain
PfamPF001704.1E-21294356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.817296359IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-11297353No hitNo description
CDDcd147021.58E-22299349No hitNo description
PROSITE patternPS000360301316IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSSDADKPP KEKESKTPPS TSQEQSPTTG AGPVNPDWAN FQAYSHIPPH GFMASGPQAH  60
PYMWGVQHIV PPYGTPPHPY VAMYPHGGIY AHPSMPPGSY PFSPYAMPSP NGVADASGNT  120
PVINEAHVKP PEMKEKLPIK RSKGSLGSLN MITRKSNEPR KTPATSANGI HSQSGESASE  180
GTSEGSDENS QNDSQLKSGE RQDSFEDEPS QNGSSVHAPQ NGVLHTPHMV INQTMAIATI  240
PASGGPATNL NIGMDYWGAP TALHGNVPSP AIAGGIVNTG SREGVQPQVW LQDERELKRQ  300
RRKQSNRESA RRSRLRKQAE CDELAQRADV LKEENASLRS EVTQIRSDYE QLLSENAVLK  360
ERLGQIPGKE DLRSGQNDQP VCSDTQQSDQ TVAVQGIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310316RRSRLRK
2310317RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.6270.0cell culture| floral bud| pod
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1073610.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444150.0BT144415.1 Lotus japonicus clone JCVI-FLLj-23N1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359655.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-149BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A445JKR10.0A0A445JKR1_GLYSO; BZIP transcription factor 16 isoform A
TrEMBLI1KWX80.0I1KWX8_SOYBN; Uncharacterized protein
STRINGGLYMA08G34280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-140basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]