PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1073610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 346aa    MW: 37441.4 Da    PI: 6.6534
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1073610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.33e-22242304163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+ +++  +++l se+
  Lj4g3v1073610.1 242 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRSEVTQIRSDYEQLLSEN 304
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-16144IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.3E-4683210No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-18236300No hitNo description
SMARTSM003385.4E-22242306IPR004827Basic-leucine zipper domain
PfamPF001703.3E-21242304IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.817244307IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11245301No hitNo description
CDDcd147025.86E-22247297No hitNo description
PROSITE patternPS000360249264IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MASGPQAHPY MWGVQHIVPP YGTPPHPYVA MYPHGGIYAH PSMPPGSYPF SPYAMPSPNG  60
VADASGNTPV INEAHVKPPE MKEKLPIKRS KGSLGSLNMI TRKSNEPRKT PATSANGIHS  120
QSGESASEGT SEGSDENSQN DSQLKSGERQ DSFEDEPSQN GSSVHAPQNG VLHTPHMVIN  180
QTMAIATIPA SGGPATNLNI GMDYWGAPTA LHGNVPSPAI AGGIVNTGSR EGVQPQVWLQ  240
DERELKRQRR KQSNRESARR SRLRKQAECD ELAQRADVLK EENASLRSEV TQIRSDYEQL  300
LSENAVLKER LGQIPGKEDL RSGQNDQPVC SDTQQSDQTV AVQGIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258264RRSRLRK
2258265RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.6270.0cell culture| floral bud| pod
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1073610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444150.0BT144415.1 Lotus japonicus clone JCVI-FLLj-23N1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359655.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-136BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0B2RWX10.0A0A0B2RWX1_GLYSO; BZIP transcription factor 16 isoform A
TrEMBLI1MMF50.0I1MMF5_SOYBN; Uncharacterized protein
STRINGGLYMA16G15810.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-128basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]