PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0462790.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Dof | ||||||||
Protein Properties | Length: 341aa MW: 36541.2 Da PI: 8.4747 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.1e-39 | 40 | 99 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++ Lj4g3v0462790.2 40 QQQALNCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRV 99 57899****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.0E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.488 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 46 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MLGNCDKTAS NKWTQVSTTM GSTSSIRAME KPGQELLQLQ QQALNCPRCD STNTKFCYYN 60 NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GGCRKNKRVI KRPTGSSTID SSPSPISSNS 120 NPPSSNPQTT TTSQINPLFF GLPGGGSDVM NLQFPRFNSR VLSGDGGLGS GSGSGFDLLQ 180 PQMNNTLGFI SGEVNDNCYR NNNGFSSNNN NSNNTLVSSY SSMFGNSSPS NPVMASLLSS 240 TLRQQKFNAF QGMVPFEQIE SDEGGVVAAS KEVKVEGQKW NNNNDNGSGG DGGGLCQNQI 300 DQHVGLSDPS LYWNNNNNTA MGLGGWSDQV SNIGPSVTSL I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0462790.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027920737.1 | 9e-96 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
TrEMBL | A0A4D6L7B8 | 2e-94 | A0A4D6L7B8_VIGUN; Uncharacterized protein | ||||
STRING | XP_004505077.1 | 2e-85 | (Cicer arietinum) | ||||
STRING | XP_007148145.1 | 9e-86 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 3e-32 | Dof family protein |