PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0451190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LSD | ||||||||
Protein Properties | Length: 141aa MW: 15389.5 Da PI: 7.8799 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.5 | 3e-15 | 53 | 77 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+tV Lj4g3v0451190.1 53 CGSCRRLLSYPRGAKHVKCSCCQTV 77 ************************9 PP | |||||||
2 | zf-LSD1 | 38.3 | 2.2e-12 | 91 | 115 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GA+ VRC+ C +V Lj4g3v0451190.1 91 CASCAVLLMYPYGASQVRCSACRFV 115 **********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-18 | 50 | 80 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-12 | 53 | 77 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-10 | 88 | 116 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.9E-10 | 91 | 115 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MQSHEAEKQE DGDGPPPGWQ PKKEEDDDGP PPGWQTILTP PPSRPSGLAQ MVCGSCRRLL 60 SYPRGAKHVK CSCCQTVNIV LEADQVGQVK CASCAVLLMY PYGASQVRCS ACRFVTEIGE 120 HNKRPPWSVQ QRKPTPAQTG C |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0451190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027347488.1 | 4e-68 | protein LOL2 isoform X1 | ||||
Swissprot | O65426 | 3e-45 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A0B2PIB0 | 3e-65 | A0A0B2PIB0_GLYSO; Protein LOL2 | ||||
TrEMBL | A0A0R0J664 | 3e-65 | A0A0R0J664_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G31600.1 | 4e-66 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-44 | lsd one like 2 |