PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0451190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LSD
Protein Properties Length: 141aa    MW: 15389.5 Da    PI: 7.8799
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0451190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.53e-155377125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     Cg+Cr lLsYPrGA++V+C++C+tV
  Lj4g3v0451190.1 53 CGSCRRLLSYPRGAKHVKCSCCQTV 77
                     ************************9 PP

2zf-LSD138.32.2e-1291115125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C +C +lL+YP+GA+ VRC+ C +V
  Lj4g3v0451190.1  91 CASCAVLLMYPYGASQVRCSACRFV 115
                      **********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-185080IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-125377IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-1088116IPR005735Zinc finger, LSD1-type
PfamPF069439.9E-1091115IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MQSHEAEKQE DGDGPPPGWQ PKKEEDDDGP PPGWQTILTP PPSRPSGLAQ MVCGSCRRLL  60
SYPRGAKHVK CSCCQTVNIV LEADQVGQVK CASCAVLLMY PYGASQVRCS ACRFVTEIGE  120
HNKRPPWSVQ QRKPTPAQTG C
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0451190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347488.14e-68protein LOL2 isoform X1
SwissprotO654263e-45LOL2_ARATH; Protein LOL2
TrEMBLA0A0B2PIB03e-65A0A0B2PIB0_GLYSO; Protein LOL2
TrEMBLA0A0R0J6643e-65A0A0R0J664_SOYBN; Uncharacterized protein
STRINGGLYMA07G31600.14e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-44lsd one like 2