PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0386050.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 356aa    MW: 39028.5 Da    PI: 5.0714
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0386050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16195231135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cgt++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Lj4g3v0386050.1 195 CQHCGTSEksTPAMRRGPAGPRSLCNACGLMWANKGT 231
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-85489IPR010399Tify domain
PROSITE profilePS5132013.4965489IPR010399Tify domain
PfamPF062009.4E-115688IPR010399Tify domain
PROSITE profilePS5101712.729125167IPR010402CCT domain
PfamPF062038.5E-15125166IPR010402CCT domain
PROSITE profilePS501149.565189248IPR000679Zinc finger, GATA-type
SMARTSM004019.5E-14189242IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-12191245No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15193236IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.53E-15194237No hitNo description
PfamPF003201.8E-14195231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDMVLNPCQN REGSLMMAAA APMQVDGVHF ANGADEGQHA PATVAASASN ASAPHPRAGE  60
LTISFEGEVY VFPAVTPEKV QAVLLLLGQK DIPNSTPNSG LLQQKNFPQI KGINDPSQSS  120
NLSRRFASLV RFREKRKERC FEKKIRYTCR KEVAQRMHRK NGQFASLKED YKSPAGNLDS  180
SNGTPPCPES IERRCQHCGT SEKSTPAMRR GPAGPRSLCN ACGLMWANKG TLRDLSKAAK  240
TPYEQNERDT SADMKPSTTE PENSCADQAE EGTPEENKPV PMDSRETPEK KNEQDILGTA  300
QTVTDNLSIQ LENHALSLDE QDIEDLADAS GTEFGIPAGF DDQIDIDVSN MRTYWL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0386050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063581e-130AP006358.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT36C13, TM0100b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583774.10.0GATA transcription factor 28
RefseqXP_028240876.10.0GATA transcription factor 28-like
SwissprotQ8GXL78e-61GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445JYD40.0A0A445JYD4_GLYSO; GATA transcription factor 28 isoform A
TrEMBLI1KL590.0I1KL59_SOYBN; Uncharacterized protein
STRINGGLYMA07G30140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-52ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]