PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0147800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 336aa    MW: 37751.2 Da    PI: 7.8761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0147800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.3e-10163210455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Lj4g3v0147800.1 163 SHSLAERVRREKISERMKRLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 210
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17157226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-10157214No hitNo description
Gene3DG3DSA:4.10.280.109.3E-17159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.948159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-11165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAAFSYQCHP FLVDPSFLLN INTGSPPLPT QFPLHQEASL NVTNQDTSCA DQSSKITISD  60
NEPSITKNLS PQSSMVVDKL EIGEQVTQKV TPKRRSRKDS SLNEPQSKDD ATEGRSKKQK  120
KSNGGVKDQD KARTEKKEQR KCPEEPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK  180
RLQRLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL ASVNPMFYDM ATDLDTLLVR  240
PEKLNSLASP SPLSSVSHSH CNSPNQATTT FAETTNSIFH TANDFLLDNS SPFFLQGQRS  300
NLPSEETGCQ FWDTEDQRQK FLLHPYGFSN NLSSFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0147800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137888.10.0hypothetical protein PHAVU_009G164300g
TrEMBLV7AW580.0V7AW58_PHAVU; Uncharacterized protein
STRINGXP_007137888.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-58bHLH family protein