PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2926340.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

YABBY

Protein Properties

Length: 175aa MW: 19826.6 Da PI: 8.6178

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2926340.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.1	1.8e-61	6	155	5	169
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++e+vCyv+CnfCntilavsvP+++l+++vtvrCGhC++llsvnl ++ + + +++l +ee + k +++++++t Lj3g3v2926340.1 6 MATERVCYVHCNFCNTILAVSVPHSTLLTIVTVRCGHCSNLLSVNLGAFQAFPPQDPQ---------KQHLSFEEPSNKDLGSSSKCHKTAAFE 90 579*****************************************998766665554.........555666665555555555554444333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++e pr+pp irP ekr rvPsaynrfikeeiqrika+nPdishreafs aaknWahfP+ihf Lj3g3v2926340.1 91 -----PVEREQPRIPP-IRPAEKRHRVPSAYNRFIKEEIQRIKATNPDISHREAFSSAAKNWAHFPHIHFA 155 .....34678899999.9*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.8E-68	7	155	IPR006780	YABBY protein
SuperFamily	SSF47095	9.16E-8	102	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.8E-5	107	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSMDMMATER VCYVHCNFCN TILAVSVPHS TLLTIVTVRC GHCSNLLSVN LGAFQAFPPQ 60 DPQKQHLSFE EPSNKDLGSS SKCHKTAAFE PVEREQPRIP PIRPAEKRHR VPSAYNRFIK 120 EEIQRIKATN PDISHREAFS SAAKNWAHFP HIHFAKQAKL DHQGEGTEKT MNGFY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2926340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090811	1e-176	BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020202839.1	1e-108	putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	1e-67	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A151RB10	1e-106	A0A151RB10_CAJCA; Putative axial regulator YABBY 2
STRING	GLYMA12G10210.3	1e-105	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-58	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]