PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2924230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 119aa MW: 13345.6 Da PI: 9.9131 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 29 | 3.5e-09 | 48 | 89 | 8 | 49 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktie 49 + ++hTkv+ R l++ ar+F+L+ eLGf + ++tie Lj3g3v2924230.1 48 NEDRHTKVNKRESCATLPSVRVARIFQLTCELGFSSHGETIE 89 579**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-6 | 48 | 89 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MSSEKTSLKR VLSSSSSTFS TNQPKYMMSE IPLPLKATNT KLHPLKGNED RHTKVNKRES 60 CATLPSVRVA RIFQLTCELG FSSHGETIET RLPLRATYTK LILCYFAINV CCLSLPTHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2924230.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020204756.1 | 2e-20 | transcription factor PCF1 | ||||
TrEMBL | A0A151R4T2 | 3e-18 | A0A151R4T2_CAJCA; Transcription factor TCP21 | ||||
STRING | GLYMA11G20201.1 | 8e-17 | (Glycine max) | ||||
STRING | XP_007132292.1 | 9e-17 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 4e-11 | TCP family protein |