PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2315420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GATA | ||||||||
Protein Properties | Length: 359aa MW: 39401.6 Da PI: 6.788 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.4 | 8.1e-18 | 239 | 273 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l Lj3g3v2315420.1 239 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 273 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.255 | 233 | 269 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-15 | 233 | 283 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.52E-13 | 235 | 296 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-14 | 237 | 270 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.49E-13 | 238 | 285 | No hit | No description |
Pfam | PF00320 | 2.1E-15 | 239 | 273 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 239 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MEAPEYFVGG YYGAGGQDQF SPAEKRHTDQ KPGEPFAIDD LFDFSNADAI MSDGFFDNVA 60 GNSTDSSTVT AVDSCNSSIS GGDNNRFAAA IVPRGFASDL HLSGELCVPY DEMAELEWLS 120 NFVEDSFSAE EELRTLKLLS GAAATTTVGT KPQTPESSSS TDTLPPFAAD DSTRNAPFLI 180 SETPLPGKAR SKRSRPAPGD WSTRLLHLVS PSDAPSQQQK VAPVKKREGL NTECTGRKCL 240 HCGAEKTPQW RTGPMGPKTL CNACGVRFKS GRLVAEYRPA ASPTFVSARH SNSHRKVLEL 300 RRQKDMQRQQ QQQLMSQSSI FGGSNGGDEF MIRHHHQHHH HQQQQQQQQH CGPEFRHVI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2315420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027906617.1 | 0.0 | GATA transcription factor 9-like | ||||
TrEMBL | A0A4D6MML4 | 0.0 | A0A4D6MML4_VIGUN; Transcription factor | ||||
STRING | XP_007135644.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 4e-63 | GATA transcription factor 9 |