PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2310050.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 295aa MW: 32751.2 Da PI: 7.1229

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2310050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.4e-40	37	97	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e alkcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Lj3g3v2310050.1 37 ELALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 6689*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	27	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-34	39	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDSSSEQHQQ MSSQSLENML ACSKAQEQDK KPRPQPELAL KCPRCDSSNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSASR RVQDQTFNPN PNPLSGFSQM 120 SYDSSDLTLA LARLQKGQMG NFDEHDFSIL GSDNILGNHA MNNNPSPTNN HGFLDSLRSG 180 FLGTNNNNVQ NLYYGYGNGD MGEVENGVGV SGDMMLPYDQ ELSSTIATTQ AVTVTTMKQE 240 LCSGREQNES KVLWGFPWQL NNGDHTHMGG ELDSGRANWN GLTPSWHGLL NSPLM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.8857	0.0	cell culture\| floral bud\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2310050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT140748	0.0	BT140748.1 Lotus japonicus clone JCVI-FLLj-18O17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020214603.1	1e-155	dof zinc finger protein DOF2.1
TrEMBL	A0A0K8K635	1e-148	A0A0K8K635_CAJCA; Dof protein
TrEMBL	A0A151TN62	1e-149	A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment)
STRING	GLYMA12G07710.1	1e-146	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	5e-45	Dof family protein