PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2309890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22258.2 Da PI: 5.2074 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.7e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l Lj3g3v2309890.1 36 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKLLQELPESQRVDAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQL 129 7********************************************************************************************* PP DUF260 95 allkee 100 a+ ++e Lj3g3v2309890.1 130 AKSQAE 135 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.153 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-42 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDNSNGSDTH NNPTSLSHSP TNSSSSSQLP QVVMSPCAAC KILRRRCADK CVLAPYFPPT 60 DPAKFTIAHR VFGASNIIKL LQELPESQRV DAVTSMVYEA SARIRDPVYG CAGAICQLQK 120 QVNELQAQLA KSQAEIVNMQ LQQANLVARI CMEMAPPNPQ ESESPQQSVG DFFISSPPQS 180 IGYGMNFLEE NTSLNTLWEP LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-41 | 35 | 138 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-41 | 35 | 138 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2309890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006642 | 0.0 | AP006642.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT34I09, TM0246c, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028807286.1 | 1e-105 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 5e-76 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A371HWE4 | 1e-102 | A0A371HWE4_MUCPR; LOB domain-containing protein 1 | ||||
STRING | GLYMA11G15810.1 | 2e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 3e-72 | LOB domain-containing protein 11 |