PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v1706700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 349aa MW: 39629.5 Da PI: 7.9778 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.1e-05 | 178 | 197 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Lj3g3v1706700.1 178 FSCPLCFKTFNRYNNMQMHM 197 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 178 | 205 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 178 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 180 | 200 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.84E-5 | 244 | 282 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 249 | 282 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MTQPHCSNDF NHGNWFEFDL NYSPSPCFNP PFYFPSSSYH HHHHHHNLTS GTSISFSQSF 60 PSSPPPREAL PLLNLSPPKR DEDLESSFSA MEVKNKKEKE LLSISSSHVT VALHLGLPRS 120 ADLASNIEIS DHHKEEEEKV VTVAAASSSE YPASSSRINR SQYWIPTPAQ ILIGPTQFSC 180 PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCAPG CKNNIDHPRA 240 KPLKDFRTLQ THYKRKHGIK PFMCRKCCKA FAVRGDWRTH EKNCGKLWYC SCGSDFKHKR 300 SLKDHIKAFG NGHKAYINGI DDNCLLDQDD IEGGSEVEQE NDESLHSHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v1706700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097140 | 1e-172 | BT097140.1 Soybean clone JCVI-FLGm-21L15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224038.1 | 1e-172 | zinc finger protein WIP2 | ||||
Swissprot | Q8W031 | 1e-125 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A151SUK8 | 1e-171 | A0A151SUK8_CAJCA; Protein TRANSPARENT TESTA 1 | ||||
STRING | GLYMA15G03830.1 | 1e-168 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-118 | C2H2 family protein |
Publications ? help Back to Top | |||
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