PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0548550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 223aa    MW: 24847.3 Da    PI: 6.6735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0548550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1877127255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeA  a+++a+ k++g
  Lj3g3v0548550.1  77 RFRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETEEEAGLAYDRAAFKIRG 127
                      79*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-3176137No hitNo description
SuperFamilySSF541712.29E-2277136IPR016177DNA-binding domain
SMARTSM003805.1E-3677141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3077136IPR001471AP2/ERF domain
PROSITE profilePS5103223.98677135IPR001471AP2/ERF domain
PfamPF008474.3E-1377127IPR001471AP2/ERF domain
PRINTSPR003677.4E-137889IPR001471AP2/ERF domain
PRINTSPR003677.4E-13117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSCDFSSLES IQHFLLLEHD SNNETCYSPS DNPFPIQDFD SSDGSSQDTN NSSPSGCKKG  60
SSAEARSSHA PPAEWKRFRG VRRRPWGKFA AEIRDPKKNG ARVWLGTYET EEEAGLAYDR  120
AAFKIRGRKA KLNFPHLIGS DTQPETASVV EAFKQNSPEP LSPASSEDGL EYSPGSKKRK  180
NLVGVLNRLA KHRSQVQVFD MGSSANDVMN VDQWWDNQSN WCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2873140168ATERF1
3gcc_A1e-2873140168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.124820.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0548550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7879700.0KC787970.1 Lotus corniculatus AP2/ERF (ERF060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236246.24e-79DNA-binding domain-containing protein
TrEMBLA0A140WWF31e-142A0A140WWF3_LOTCO; AP2/ERF
STRINGGLYMA03G26520.11e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-40ethylene-responsive element binding factor 13