PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0515110.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34245.1 Da    PI: 8.2897
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0515110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19147201256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq  +Lee F+++++++ ++++eLAk+l+L  rqV vWFqNrRa+ k
  Lj3g3v0515110.1 147 RKKLRLSKEQALVLEETFKEHNTLNPKQKQELAKQLNLMPRQVEVWFQNRRARTK 201
                      788899***********************************************98 PP
2HD-ZIP_I/II125.22.9e-40147236191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+ +LEe+F+e+++L+p++K+ela++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Lj3g3v0515110.1 147 RKKLRLSKEQALVLEETFKEHNTLNPKQKQELAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 236
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-262113IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.4E-19121204IPR009057Homeodomain-like
SuperFamilySSF466891.37E-19130204IPR009057Homeodomain-like
PROSITE profilePS5007117.961143203IPR001356Homeobox domain
SMARTSM003896.6E-17145207IPR001356Homeobox domain
CDDcd000862.48E-15147204No hitNo description
PfamPF000466.1E-17147201IPR001356Homeobox domain
PROSITE patternPS000270178201IPR017970Homeobox, conserved site
PfamPF021832.6E-11203237IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.1E-27203246IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGKDDDGLS LGLSLSLGSG KNAANNNDKN NQTLFPMHKP PQSTSNQRAS FNNLFPFHDR  60
SSEMRLFLRG IDSNSQRPST TVAVPAVACD DENGVSSPNS TVSSISGKRS EREGNGDEHE  120
AAERASCSRG SEDDDGGGGD GDGDTSRKKL RLSKEQALVL EETFKEHNTL NPKQKQELAK  180
QLNLMPRQVE VWFQNRRART KLKQTEVDCE YLKRCCENLT EENRRLQKEV QELRALKLSP  240
QLYMQMNPPT TLTMCPSCER VAVSSASSSS SPTVPSAPAP ANRNPLGSSI QRPVPINPWA  300
AMSIQQHRPR P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151SRKKLRL
2195203RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0515110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336643.11e-138homeobox-leucine zipper protein HAT3
SwissprotP466026e-98HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A151RB951e-136A0A151RB95_CAJCA; Homeobox-leucine zipper protein HAT3
STRINGGLYMA03G26701.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.16e-85homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]