PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0489500.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 469aa    MW: 50433 Da    PI: 7.6369
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0489500.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07179199526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Lj3g3v0489500.2 179 PCPDFRK-GACRRGDMCEYAHG 199
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-6174200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4179201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582179201IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5179199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5207237IPR000571Zinc finger, CCCH-type
SMARTSM0035635209232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVAATYGSID LLLSAGADVN CVDANGNRAV DVIVVPPKLQ GMKAILEELL SDSASDGSVG  60
GISVPVSVNS SSPGSPVHFL SLENGMPCSP LGSPRSPGAA KLNDAGISTF SEKKEYPIDP  120
SLPDIKNSIY TTDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC  180
PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV  240
STGSAVPSPR SSASAASVMD MAAAMSLLPG SPSSISSMSP SHFGQPMSPS ASGISLSSPS  300
WAQPNVPALH LPGSNFQSSR LRSSLSARDI PPEDLNMLPD FDGQQHVMND LSCFLQPRSG  360
AVSASRSCRS KILTPSNLED LFSAEFSSSP RYSDPAMASV FSPTHRSAVM NQFQQLQSTL  420
SPINTNMMSP KNVEHPLLQA SFGVASPGRM SPRSVEPISP MGARLSAFP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.59571e-132floral bud| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0489500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027905453.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_027905454.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_027905455.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_027905456.10.0zinc finger CCCH domain-containing protein 30-like isoform X2
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A4D6M4Z10.0A0A4D6M4Z1_VIGUN; Transcription elongation factor SPT5
STRINGXP_007148879.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-106CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]