PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0459900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 302aa    MW: 34749 Da    PI: 7.7717
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0459900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61e-22126185259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqKe+ +s+++r+YYrCt++   +C+++k+v+r + +  +  +tY g+Hn++
  Lj3g3v0459900.1 126 SDGYQWRKYGQKEILNSKYSRNYYRCTHKfdqKCQATKQVQRIQ-EAPLYRTTYYGHHNCK 185
                      7***************************9999***********9.9999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-24114186IPR003657WRKY domain
SuperFamilySSF1182901.44E-21120185IPR003657WRKY domain
PROSITE profilePS5081116.34120183IPR003657WRKY domain
SMARTSM007741.1E-33125186IPR003657WRKY domain
PfamPF031065.6E-23127185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEDQRKVIEE LVRGREFANQ LRKVIRGGDE CASATPFAQH LAKNVLTSFS NTLLFLHKYP  60
TTNYRSQDLV SDQMQHVRDT SFFASPAKSE DSQDSCKSSI SKDRRGCYKR RKIAQTWEKV  120
SQTPTSDGYQ WRKYGQKEIL NSKYSRNYYR CTHKFDQKCQ ATKQVQRIQE APLYRTTYYG  180
HHNCKNMLIH PEIILDPSSP SETSIFLSFN NTFPTPAKQD CPFLSSSFLS PSVRNECKEE  240
VPSLSLEDYI LSSPEPTIDN SSRHLATASS ILESSNHRDV MSSVIFIDSV ELDMDDFFLP  300
FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-181271851069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0459900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337659.11e-114WRKY DNA-binding transcription factor 70-like
TrEMBLV7APM31e-102V7APM3_PHAVU; Uncharacterized protein
STRINGXP_007134564.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-32WRKY DNA-binding protein 70